Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1883 96.9 2e-15 seq5 84.2 1e-11 >seq1883 Length=75506 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| ||||| || ||||| |||| || | || Sbjct 35430 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCAAGCTGC 35489 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || || | |||||||||||| | || | ||| || ||||| || || Sbjct 35490 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTG 35549 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| || | ||| | ||||||| || ||||| || | |||||||| || || || Sbjct 35550 GCCTTC-ACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCGGT 35608 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 | || || || |||||||||||| Sbjct 35609 GAGAGTCTTGACGAAGATCTGCATA 35633 >seq5 Length=272196 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || || | |||| || || ||| ||| || || ||||| || |||| Sbjct 174133 CACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGG 174192 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| || || |||| || | || || || || || |||| ||||| || ||| | | Sbjct 174193 AGAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCTGGGG 174252 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||| || ||||| || || || | ||| ||| | ||||||| || ||| Sbjct 174253 GAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCGATGGTGTCGGAAGACTCC 174311 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | || || || ||||||||||| Sbjct 174312 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 174361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328693688350080