Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq17 325 4e-84 seq2341 179 4e-40 seq1610 125 8e-24 >seq17 Length=201905 Score = 325 bits (360), Expect = 4e-84 Identities = 531/755 (70%), Gaps = 10/755 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| ||||| | || ||| || ||| || | | | || | |||||| ||| || Sbjct 87647 ATGCGTGTCGCTGTTGGCATCTGGGGGGACAACATCGAGAGGGTTCTTGAGACCTACAAC 87706 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| | | |||| ||| || ||||| ||||||| |||||||| || || ||| | Sbjct 87707 TACATGTCCAACAAGTTCTTCACACACGCGTCGCCAACGCTGTTCAATGCCGGCACGCCT 87766 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || | ||| ||||| |||||||| || | |||||||| ||| || || |||||| Sbjct 87767 CAGGCGCAGTTGTCGTCGTGCTTCCTCGTTGACATGAAGGAGGACAGCATTGAGGGCATC 87826 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 || || || || ||| |||||| ||||||||| | | || || || ||| || || Sbjct 87827 TATGATACCCTGAAGACCTGTGCCATGATCTCCAAGATGGCTGGAGGCATTGGTCTCAAC 87886 Query 53435 TGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | || ||||||| | |||| | ||| || || |||||| || ||| Sbjct 87887 G--TCCACCGCATCCGTGCCACCGGCTCCTACATCGCTGGCACCAACGGCACGTCCAATG 87944 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||| | |||||| | || |||||||||||||| ||||| |||||| | |||||||| Sbjct 87945 GCATCATCCCTATGTTGCGTGTCTTCAACAACACTGCCCGATACGTCGATCAGGGTGGCA 88004 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 |||||| || | || ||||||||||| ||||| |||||||| || | | |||| Sbjct 88005 ATAAGCGCCCCGGTGCTTTTGCCATCTACCTGGAGCCATGGCACGCTGATGTCTTCGAGT 88064 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACA 53671 | ||||| ||||| ||| || || | |||||| | || ||| |||||||| || Sbjct 88065 TCCTCGACCTGCGGAAGAACCACGGAAAGGAAGAGGTCCG-TGCTCGTGACCTCTTCCTT 88123 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || || ||||| ||||| ||||||||| | ||||||||| ||| || ||| ||| Sbjct 88124 GCCCTCTGGATCCCGGATCTCTTCATGAAGCGTGTGGAGAAGAACGGCGACTGGACTCTG 88183 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| |||||||||||||||| | | | || |||||| |||||||| | | | Sbjct 88184 ATGTGCCCCAACGAGTGCCCCGGCCTTGCCGACTG-CTACGGCGAGGAGTTCGAGGCTCT 88242 Query 53791 GTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 ||| || ||||| || | |||| ||| | | |||| | ||||||| || | | Sbjct 88243 GTACGAGAAGTACG-AGCGCGAGGGTCGCGGCCAAAAGACCCTGAAGGCGCAGAAGCTCT 88301 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || |||| |||||| || || ||||| || | || | ||||| ||||||||| Sbjct 88302 GGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACCCCTTCATGTTGTACAAGGATC 88361 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 | |||| |||||||||||||||||| | ||| Sbjct 88362 ACGCCAACCGCAAGAGCAACCAGAAGAACCTTGGC 88396 Score = 111 bits (122), Expect = 2e-19 Identities = 304/454 (67%), Gaps = 25/454 (6%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | || | ||||||| ||||| || || ||||| | |||||| |||||||| Sbjct 88919 CGCAACAGCTTGTTGATGGCGCCCATGCCCACTGCCTCGACTTCGCAGATCCTGGGCAAC 88978 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| || ||||| || || |||||||||| | |||||| || || || ||| Sbjct 88979 AACGAGTGCTTTGAGCCCTATACATCCAACATCTATCAGCGCCGCGTGCTCGCTGGCGAG 89038 Query 55604 TT------TGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || ||||| ||| || | || ||||||| ||| | || |||| Sbjct 89039 TTCCAAGTTGTCA--ATC--CATGG--CTGCTCAAGGATCTGGTGCAGTGTGGTCTGTGG 89092 Query 55658 AACCCGCAGATCAAGA--CGGAT-ATTG-TGCGGAACGGGGGGTCCGTCCAGAATCT--G 55711 | | | |||| || || || | || ||| || || |||||||| | | Sbjct 89093 TCTGAGGACCTGAAGAACCGCATCATCGCTGAGGAT----GGCTCTATCCAGAATATTCG 89148 Query 55712 GAGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 || ||| | | |||||| | ||| ||| || |||||||| | |||| || Sbjct 89149 CAGCATCCCAGATGACATCAAGGCCCTCTACAAGACCGTCTGGGAGATCTCGCAGAGGAC 89208 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 | | | ||| ||| ||||||||||| | |||||||||||||||||| |||||||| Sbjct 89209 CATCGTGCAGATGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCCCAGTCGCTGAACAT 89268 Query 55831 CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCG-ATGCACTTTTACGGGTGGAAGA 55889 |||| | ||||| ||| |||| | | || | |||||||| ||| |||||| Sbjct 89269 ACACATGCGTGAGCCTTCTATGGGCAAGATCA-CTAGCATGCACTTCACCGGTTGGAAGC 89327 Query 55890 AGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| |||||||| || |||||||| || || || Sbjct 89328 TGGGTCTCAAGACTGGCATGTACTACCTCCGCAC 89361 >seq2341 Length=145185 Score = 179 bits (198), Expect = 4e-40 Identities = 207/279 (74%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || || || || ||||| |||| ||| |||||||| | ||||| || ||||| | |||| Sbjct 67526 AGACGGGTAAAGATGTATCGAGCGCTGGCAGCATCGCTACCACCGGCGAGACGAGAACCG 67585 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | || || |||||||||| ||| | |||||| | ||||||||||| || |||| | Sbjct 67586 AAATTGCCGCTGGGCTCCAAGATGTTGACGTTGTTCGAACCCACAAAGTTCTGTGCCAGG 67645 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 || || || ||| || |||||||| |||||||| || ||||| || | ||| Sbjct 67646 CCGATGATGGTCTGTTGCAGTGAGGCCTCACCGTGGTGATAAGCAGTCTGTTCAGAGACG 67705 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAA 117538 ||||| ||||| | |||||||| |||| || |||||| ||||| ||| || | Sbjct 67706 TAGCCAGCCAGTTCGACCACCTTCTTGTCCTTGGTTAGGTTCCGCTTGAAGCAAGCGAAC 67765 Query 117539 ATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACG 117577 | ||||||||||| | ||||||||||||||| ||||| Sbjct 67766 ACAACCTTGCGCTGGCCAGGCTTCAGACCATCCACCACG 67804 Score = 149 bits (164), Expect = 7e-31 Identities = 299/441 (68%), Gaps = 2/441 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||| ||||| || || || |||||| || | ||| || | | |||||||| | | Sbjct 67379 CCGGTTCCGATACCATCAGCGCCGTTGCAGAGGACCATTGGGAGGACTGGGGCGTACA-C 67437 Query 151936 TC-CGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGG 151994 || |||||| | || | || || || | | | || | ||| | | |||| | Sbjct 67438 TCTCGGCTCAATTTGCTTGCCATCCTCGAACTGGGCTTCGAGAACTGGCTCGTCAAGAGC 67497 Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 | ||| | ||| || | | ||| || ||| || ||||||||||| | |||||| || Sbjct 67498 AGAGAACACCCGCCGGGCGAAGGGAGACAGACGGGTAAAGATGTATCGAGCGCTGGCAGC 67557 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||| | ||||| || || || | || || | || |||||| | || ||||| ||| Sbjct 67558 ATCGCTACCACCGGCGAGACGAGAACCGAAATTGCCGCTGGGCTCCAAGATGTTGACGTT 67617 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||| | ||||| || ||||| |||| | || || ||||| || ||||| Sbjct 67618 GTTCGAACCCACAAAGTTCTGTGCCAGGCCGATGATGGTCTGTTGCAGTGAGGCCTCACC 67677 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 ||||||||| || ||||| || | || ||| || |||| | |||||||| ||||| | Sbjct 67678 GTGGTGATAAGCAGTCTGTTCAGAGACGTAGCCAGCCAGTTCGACCACCTTCTTGTCCTT 67737 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 || |||||| ||||| || ||| | | |||||||||||| || |||| ||| || Sbjct 67738 GGTTAGGTTCCGCTTGAAGCAAGCGAACACAACCTTGCGCTGGCCAGGCTTCAGACCATC 67797 Query 152295 CACCACGTGAGGAATCGAACG 152315 ||||||| ||||| || || Sbjct 67798 CACCACGGACGGAATGGATCG 67818 >seq1610 Length=70883 Score = 125 bits (138), Expect = 8e-24 Identities = 305/454 (67%), Gaps = 20/454 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||| || ||||| || || |||||||||||||| | | |||||||||||||| Sbjct 62465 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTCCCGCCAAGGGAGATGTTCTCCATG 62406 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATGAG 74578 ||||||||||||| | | ||| || |||||| || | | | | | ||| Sbjct 62405 AAGTCGAAAGGGTTAGTAGACTTGTAGAT---CTTCTCGTTGCCGAGAGCGA-CGAGGAG 62350 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 || || || || |||| ||||||||| |||| |||| |||||||| || Sbjct 62349 ACGGTCGGCGACGAATTCGATGTACTGCTTCATCAAGTTGGCATTCATGCCGAGTAGGGC 62290 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698 || |||| |||||||| | ||||| |||| | | |||| ||| || ||| | Sbjct 62289 ACAGGGCAAGGCCTCGGTCAGGAACTCCTTCTCAA--TGGCAACAGCATCGGT-AATGAT 62233 Query 74699 G---TGAATGT-CT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGC 74752 | | | | || ||| |||| || | ||||||| ||| | ||| ||| Sbjct 62232 GGCTTCCACGCGCTGCTTGCTGGGGCGGTTGT---TCAGGTGTGAGAACAGCAAGCAGGC 62176 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 || || ||| || || || | || | ||| || || || | |||||||| Sbjct 62175 GAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGTTCGTTGGAGAAGGTCAGGCCAGG 62116 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| || ||||||||||||| ||| ||||||| | ||| | ||||||||||| || || Sbjct 62115 CATCAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAAGCGCCACTGAAGAAAATACC 62056 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCG 74906 ||||||| ||||| || |||||||| || ||| Sbjct 62055 TTCGACAGCAGCAAATGCAACAAGGCGCTGAGCG 62022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198393325200