Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 179 9e-40 seq1883 176 1e-38 seq9 138 3e-27 seq17 107 4e-18 >seq5 Length=272196 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || ||||||||||| || | ||||| | || || Sbjct 174150 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTACGGCCGTCC 174209 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| |||||||| || |||| || ||||||||| Sbjct 174210 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCC 174269 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 174270 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 174329 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 174330 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 174361 >seq1883 Length=75506 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | || || | || || Sbjct 35421 AGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCC 35480 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || || || ||||| | || ||||||||| Sbjct 35481 TCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTCC 35540 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| || || |||||||| ||||||||| Sbjct 35541 TGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTC 35600 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| || || | |||||| Sbjct 35601 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 35632 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || || | ||||| | ||||| Sbjct 35649 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 35708 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || ||||| ||||| | || ||||||||| Sbjct 35709 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 35768 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||||||| || ||||| |||||||| ||| Sbjct 35769 TGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTC 35828 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || | |||||| || Sbjct 35829 TTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTT 35863 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || || ||||| || || | || |||| || ||| Sbjct 35193 AGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCAGACAGCGTCCGGCCGTCT 35252 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || |||||||| || || ||||| || |||| || |||||||| Sbjct 35253 TCCAGCTGCTTGCCCGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 35312 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| ||||| ||||| || ||| |||||||| ||||||||| Sbjct 35313 TGAATCTTGGCCTTCACGTTGTCGATCGTGTCCGATGATTCCACCTCGAGGGTGATCGTC 35372 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | ||||| Sbjct 35373 TTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 35404 >seq9 Length=228969 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||| || | ||||| || ||||||||||| |||||||| Sbjct 118297 TTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 118356 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || ||||| || ||||| | || ||||||||||||||||| || ||||| ||| Sbjct 118357 AATCGCTGTTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 118416 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| || || ||||| || ||||| ||||| ||||| |||||||| || || Sbjct 118417 ATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTCAGAGTCTTCACGAA 118475 >seq17 Length=201905 Score = 107 bits (118), Expect = 4e-18 Identities = 190/276 (69%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGC---ATCTTTGTACGCAATGAAGGGC 178144 |||| |||||| ||||||||||| | | |||| ||| |||||| |||||||| Sbjct 88395 CCAAGGTTCTTCTGGTTGCTCTTGCGGT---TGGCGTGATCCTTGTACAACATGAAGGGG 88339 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||| | ||||||| |||| ||| || ||| |||| ||| || | ||| Sbjct 88338 TTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTCTGCGCCTTCAGGGTC 88279 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 |||| | | || || ||||||||| | ||| || ||||||| ||| || ||| Sbjct 88278 TTTTGGCCGCGACCCTCGCGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCGCCGTAG 88219 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 || | || ||||| ||| |||||||| | ||| |||| | |||| | || | Sbjct 88218 CAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCC 88159 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCA 178360 || || ||||||||||| || | | |||||| |||| Sbjct 88158 ACACGCTTCATGAAGAGATCCGGGATCCAGAGGGCA 88123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159113771891510