Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysosporium_20queenslandicum_20[genbank_20GCA_5F001430955.1_202015
-11-03] 2,724 sequences; 32,335,957 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2704 132 5e-26
seq1954 120 3e-22
seq934 118 1e-21
>seq2704
Length=633058
Score = 132 bits (146), Expect = 5e-26
Identities = 263/384 (68%), Gaps = 4/384 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
||||||| || ||||| | || |||||| | | || | | || | | ||||||
Sbjct 56648 AGAAGGCTGATTGGGCCATTCGATGGATCCAAGACCAGGAATCAACTTTTGCCCAGCGCC 56589
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| || ||||| || ||||| ||||| |||| || ||| ||| ||| | || || |
Sbjct 56588 TTGTTGCCTTTGCAGCCGTTGAGGGTATCTTTTTCAGTGGCTCTTTTGCCTCTATCTTCT 56529
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| || ||||| ||||| ||||| || ||| ||| || || || ||| | |
Sbjct 56528 GGCTGAAGAAGCGTGGCCTTATGCCTGGCCTCACCTTCTCCAATGAACTGATTTCCCGCG 56469
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCA-TTTGGTGCAGCGACCG 117220
||||||| || || |||||||||||| | || ||| || || || || || |||
Sbjct 56468 ACGAGGGCCTCCACACTGACTTTGCCTGTCTTCTCTTCTCTCACCTTCGT-CACCGCCCG 56410
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
||| | | |||| || | |||| || || |||| ||||| | ||| |
Sbjct 56409 AGCCCCCAGGCCGTCGAGGCTGTTATCACAGAAGCTGTCGAGATCGAAAAAGAATTCTTG 56350
Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339
||||| || || || |||| || || || | || | | || |||| ||||||||
Sbjct 56349 ACCGATGCCCTTCC-TTGCGCCCTTCTCGGCATGAACTCCAAACTCATGTGCCAATACAT 56291
Query 117340 CGAGTTCGTCGCCGACAGGCTGCT 117363
|||||| |||||||||||| ||||
Sbjct 56290 CGAGTTTGTCGCCGACAGGTTGCT 56267
>seq1954
Length=527115
Score = 120 bits (132), Expect = 3e-22
Identities = 96/116 (83%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||||||| | ||||||||||| ||||||| ||| ||||||||||| ||
Sbjct 282596 GACAAGGAGGGCATCCCCCCTGACCAGCAACGTCTCATCTTCGCTGGCAAACAGCTCGAG 282655
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||| |||||||| || |||||||||||||||||| |||| || || || ||
Sbjct 282656 GACGGCCGCACCCTTTCGGATTACAACATCCAGAAGGAGTCCACCCTTCACCTCGT 282711
>seq934
Length=187681
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||||||||||||||| |||| || || |||
Sbjct 9290 ATGCAGATTTTCGTGAAGACTCTCACGGGCAAAACCATCACTCTCGAGGTTGAGTCCAGT 9349
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||| || || | ||||| ||||||||||| | ||||||
Sbjct 9350 GATACGATCGACAATGTTAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 9409
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| ||| || |||||||| || || | ||||| ||| |||||||||
Sbjct 9410 CAACGCTTGATCTTCGCTGGTAAACAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 9469
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|| ||||||||| | || || ||
Sbjct 9470 ATTCAGAAGGAGTCAACCCTTCA 9492
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || || || ||||| | || || ||| | |
Sbjct 9814 ATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACAATCACACTTGAAGTTGAATCTTCA 9873
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | || ||||| | | ||||| ||||| || || | |||||
Sbjct 9874 GACACGATCGATAACGTTAAAACAAAAA-TCCAAGACAAGGAGGGAATTCCACCAGACCA 9932
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || || | ||| ||||| ||||| || || | ||||| ||| ||||||||
Sbjct 9933 GCAACGTCTAATTTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACACTCTCAGACTACAA 9992
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| || |||||| | || || ||||| || | ||| || | || ||
Sbjct 9993 CATTCAAAAGGAGTCTACCCTACATCTCGTCCTTCGCCTGCGCGGTGG 10040
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||||||||| || || || | || ||||| || || || | || |||||| || |
Sbjct 10042 ATGCAAATATTTGTGAAGACATTGACCGGCAAGACTATTACGTTAGAGGTCGAATCCTCA 10101
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| |||||| | || || ||||| ||||| | |||||
Sbjct 10102 GACACAATCGACAACG-TGAAGACAAAAATCCAAGATAAGGAGGGTATCCCACCAGACCA 10160
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||||| ||||| | || || || || || || || | ||||| || |||||| ||
Sbjct 10161 ACAACGTCTCATTTTTGCTGGTAAGCAACTTGAAGATGGCCGCACGCTTTCCGACTATAA 10220
Query 40869 CATCCAGAAGGA 40880
||||||||||||
Sbjct 10221 CATCCAGAAGGA 10232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515201656786240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |