Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysosporium_20queenslandicum_20[genbank_20GCA_5F001430955.1_202015 -11-03] 2,724 sequences; 32,335,957 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2528 203 4e-47 seq2704 82.4 1e-10 >seq2528 Length=594046 Score = 203 bits (224), Expect = 4e-47 Identities = 590/904 (65%), Gaps = 22/904 (2%) Strand=Plus/Minus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 || |||||||| || |||||| |||| | || |||| ||||| | ||| | | Sbjct 61452 TCAAACTCGTCGCCGTAAACATCAGCCAACCCTGGTGCCTCATTGGGACAGAACAAGGTC 61393 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 || || |||| | || || || |||||||| | ||| || |||| ||||| | ||| Sbjct 61392 CAATCGCCGTTCTTCTCAACCCGCTTCATAAACAAATCTGGGGTCCAGAGAGCAAGAAAG 61333 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCC 63365 ||||| | | ||| |||||| ||||| | |||||| ||||| | || | Sbjct 61332 AGATCACGAGCTCTCACTTCCTCTTTTCCG---TGGTTTTTACGGAGATCCAAAAATTCG 61276 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | ||||| || ||||| ||||| | || ||||| | | || || ||||| || || Sbjct 61275 AAGATATCGGAGTGCCAGGGTTCAAGATAGATGGCGAAGGCACCTGGTCGTTTATTGCCA 61216 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 ||||| || | || | ||| ||||| || | || | | ||| || || || ||||| Sbjct 61215 CCCTGGTCAACATAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGATGATTCCGTTA 61156 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT----TACTAATTGA 63541 || ||||| || || | || ||| ||| ||||||| ||| ||| ||| | Sbjct 61155 GAGGAGCCATTTGTTCCTGCAATGTAGGAGCCAGTGGCACGGATACGGTGTAC--ATTAA 61098 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 |||| || || || || | || || || | ||| || ||| | ||| || ||||| Sbjct 61097 --GACCAATACCACCAGCTGTCTTGGAAATCAGTGCACAGGTTTTGAGCGTATCGTAGAT 61040 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661 ||||| || ||||| || |||||| | || |||||| | |||||| | | | Sbjct 61039 ACCTTCGATACTATCCTCCTTCATGTCGATGAGGAAACAGGATGCCATTTGTGGCTGTGG 60980 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||||||||| || || | || ||||||||||| || || |||||| || | | ||| Sbjct 60979 AGTTCCCGCGTTGAAAAGAGTGGGAGAAGCGTGAGTGAAGAATTTTTGGGACATCAAATT 60920 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || ||||| || || || ||| ||||| || || || || ||||| | Sbjct 60919 GTAAGTTTCAATCGCCTTCTCAATGTCCTCGCCGTGAATACCAACCGCAACCCGCATAAT 60860 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||| || | || ||| ||| || || ||||| || || || | Sbjct 60859 CATGTGCTGCGGACGCTCGGCAACCTTGCCATTGATCCGCAACAGATAAGACCGCTCTAG 60800 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 || || || |||||||| | ||| ||| || || ||||||| |||| |||| || || Sbjct 60799 TGTCTTGAAGCCAAAATATTGGTAGTTAAAATCACGATCGTAAACAATAGCCGAGTTAAG 60740 Query 63902 CTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT----GAAATAATCGGAGAAT 63957 || || | || |||| || || |||| || || || || || | Sbjct 60739 CTCGTCAGCGTGCTTCATAACAATTTC----GTAAGTTTTTTGAGAGATCATAGGTGCTG 60684 Query 63958 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 64017 | || || || || || || | | | ||| || || || | ||| ||| Sbjct 60683 GGCGGTTGTTCTTTGGGTTGACGTAATGATAGAGATCGTCAATGACCGAAGAGAATTGTT 60624 Query 64018 tttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64077 |||| || | ||| || || || |||| ||||||||||||||| || || ||||| || | Sbjct 60623 TTTTCGTCTGCTTATGCAGGTTGGATACGGCTATTCTGGCGGCAAGGATTGCATAGTCTG 60564 Query 64078 GATG 64081 |||| Sbjct 60563 GATG 60560 Score = 107 bits (118), Expect = 2e-18 Identities = 687/1095 (63%), Gaps = 23/1095 (2%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| ||||| || || | | || || || |||||||| || ||||| || Sbjct 62656 GTGAATTGAATTGGAGCAGACGCTGCCATGGTTCGGAGGTAGTACATCCCGGTTTTCAGG 62597 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || || |||||||| ||| ||||| || || | |||| | || || | Sbjct 62596 CCCAGCTTCCATCCGGCAAAGTGCATGCTGGTGATTTTGCCCATGGTGGGCTCCTTCAAG 62537 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 |||||||||| |||||| || |||||||| || || | || |||||||| | | Sbjct 62536 TGGATATTCAGAGATTGGGACTGGTCGATGAATGCACCACGATCGGCAGCCATCTGAACA 62477 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || | || | |||||||| | || ||||| | | |||||||| | || | Sbjct 62476 ATGGTTCTCTGAGAGATTTCCCACACCGTCTTATAGAGTGCTTTAATATCCGCAGGGATA 62417 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | | ||||| || || || || || | || || | ||||| || | || | Sbjct 62416 TTGGGGATGTTCTGGATCGAACCGCCTTCAGCAATGATACGGTTCTTCATATTGTCCGAC 62357 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || | ||| | | || | || || |||||||| |||||||| || || Sbjct 62356 CACAGACCGAGATCGACGAGATCTTTCAGAAGCCATGGGTTAACGACTTGGAACTCGCCT 62297 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | | || | |||| || || || || || || || | | || || ||| Sbjct 62296 GCAAGAACCCGTCGAGAATAGATGTTTGATGTGTATGGCTCAAAACATTCGTTGAATCCG 62237 Query 62463 AAAATTTGAGCAGTTGAT-GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 | || ||| | | || | ||||| ||||||||||| || | | ||| || | | ||| Sbjct 62236 AGGATCTGA-CTGGTGCTAGCAGTTGGCATAGGTGCAACGAGCAGACTGTTGCGTACACC 62178 Query 62522 GTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANN 62581 | | | ||| | | ||| || ||||||| |||||| || | || || Sbjct 62177 ATGTTTGGCGATGTCCTTTTTCAGCGCGTCCCAATCCCAAAGGTCAGTTGGCGTCACGTT 62118 Query 62582 NNNNNNNNNATATTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCAT 62637 ||| || | | |||| | ||| || | | ||| | || || |||| Sbjct 62117 CCACATATCATACTGCAAAGTACCCTGAGATACAGGAG----AGCCTTCGTAGGTCTCAT 62062 Query 62638 ATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 62697 | || || || | || | | ||| ||| || || | | |||||| |||| Sbjct 62061 AGGGCCCGTCAACTTTGGCGATATCGCAAGACGCGGTCAAAGCCGCATGATAAATTGTTT 62002 Query 62698 CAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG-A 62756 ||||||||| |||| | | | || || || ||||||||| ||| || | | Sbjct 62001 CAAAGATCTGAATATTCAACTGCTTAGCCTCGGGCGAATCAAATGGC-AATCGGAGCGCA 61943 Query 62757 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62816 | || || || || | ||||| || |||| ||||||| | ||| | |||| Sbjct 61942 AGGAAAGCATCGGCAAGACCTTGGACGCCAACCGCGATAGGCCGATGACGGAAATTACTC 61883 Query 62817 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 62876 | ||||| || | |||||| | || |||| |||||||| || ||||| | |||| Sbjct 61882 TTGCGGGCTTCAGGGACAGGATAGTGGTTGTTATCAATAATTTTGTTCAGATTGCGGACA 61823 Query 62877 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-TCGCC-CATCTATTACAAAC- 62933 | |||| || || | || |||| ||| ||| | ||||| | | | ||| Sbjct 61822 AGAACTTGAGTAACTTCATGCAATTTGCCAAAGTCATACTCGCCACGAACAGGATCAACG 61763 Query 62934 -ATGTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATAT 62990 |||| ||| |||| |||||||| || || || || || |||| | | | || Sbjct 61762 TATGTGGGCAAGGCAAGCGATGCCAGGTTGCAAACTGCAACTTCATCTGGGGCGGTGTAC 61703 Query 62991 TGTATTATCTCAGTGCAAAGATTACTACACTTGA-TAGTTCCTAAATTTTGTTGATTACT 63049 | || || || ||||| || || | | | || ||||||| | |||| || || || Sbjct 61702 TCGATGATTTCCGTGCAGAGGTT-CGAGCTTCGAATAGTTCCAAGGTTTTTCTGGTTGCT 61644 Query 63050 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 63109 ||| ||| ||||||||||| ||||| ||||| || |||| || || |||||| ||| Sbjct 61643 CTTGCGGTTGCACGCATCCTTGTAAAGCATGAACGGGTTACCCGTCTCCGTCTGAGCTTC 61584 Query 63110 TATAATCGCTTTCCA 63124 || || || | ||| Sbjct 61583 TAGGATGGCATACCA 61569 >seq2704 Length=633058 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| || |||||||| | ||| | ||| || || || ||||| || ||||| ||||| Sbjct 56455 GTGGAGGCCCTCGTCGCGGGAAATCAGTTCATTGGAGAAGGTGAGGCCAGGCATAAGGCC 56514 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || ||||| || || || || || || || || ||||| || || || || Sbjct 56515 ACGCTTCTTCAGCCAGAAGATAGAGGCAAAAGAGCCACTGAAAAAGATACCCTCAACGGC 56574 Query 33716 AGCAAAGGCAATAAG 33730 |||||||||| ||| Sbjct 56575 TGCAAAGGCAACAAG 56589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629796154710720