Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysosporium_20queenslandicum_20[genbank_20GCA_5F001430955.1_202015 -11-03] 2,724 sequences; 32,335,957 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2528 194 2e-44 seq2704 95.1 2e-14 >seq2528 Length=594046 Score = 194 bits (214), Expect = 2e-44 Identities = 477/720 (66%), Gaps = 14/720 (2%) Strand=Plus/Minus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || |||||||| || |||||| |||| || || |||| ||||| | ||| | | Sbjct 61452 TCAAACTCGTCGCCGTAAACATCAGCCAACCCTGGTGCCTCATTGGGACAGAACAAGGTC 61393 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || || |||| | || || || |||||||| | ||| || |||| ||||| | ||| Sbjct 61392 CAATCGCCGTTCTTCTCAACCCGCTTCATAAACAAATCTGGGGTCCAGAGAGCAAGAAAG 61333 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCC 66158 | ||| | | ||| |||||| ||||| | |||||| ||||| | || | Sbjct 61332 AGATCACGAGCTCTCACTTCCTCTTTTCCG---TGGTTTTTACGGAGATCCAAAAATTCG 61276 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | ||||| | ||||| ||||| | || ||||| | | || || ||||| || || Sbjct 61275 AAGATATCGGAGTGCCAGGGTTCAAGATAGATGGCGAAGGCACCTGGTCGTTTATTGCCA 61216 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 ||||| || | || | ||| ||||| || | || | | ||| || || || || || Sbjct 61215 CCCTGGTCAACATAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGATGATTCCGTTA 61156 Query 66279 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATAT----TACTAATTGA 66334 || | ||||| || || | || ||| ||| | ||||| ||| ||| ||| | Sbjct 61155 GAGGAGCCATTTGTTCCTGCAATGTAGGAGCCAGTGGCACGGATACGGTGTAC--ATTAA 61098 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 |||| || || || || | || || || | ||| || ||| | |||||| ||||| Sbjct 61097 --GACCAATACCACCAGCTGTCTTGGAAATCAGTGCACAGGTTTTGAGCGTATCGTAGAT 61040 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454 || || |||||||| ||| |||||| | || |||||| | |||||| | | Sbjct 61039 ACCTTCGATACTATCCTCCTTCATGTCGATGAGGAAACAGGATGCCATTTGTGGCTGTGG 60980 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||||||||| || || | || ||||||||||| || || |||||| || | | ||| Sbjct 60979 AGTTCCCGCGTTGAAAAGAGTGGGAGAAGCGTGAGTGAAGAATTTTTGGGACATCAAATT 60920 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || ||||| || || || ||| ||||| || || || || ||||| | Sbjct 60919 GTAAGTTTCAATCGCCTTCTCAATGTCCTCGCCGTGAATACCAACCGCAACCCGCATAAT 60860 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||| || | || | | |||| || || ||||| || || || | Sbjct 60859 CATGTGCTGCGGACGCTCGGCAACCTTGCCATTGATCCGCAACAGATAAGACCGCTCTAG 60800 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 || || || |||||||| | ||| ||| || || ||||||| |||| ||||||| || Sbjct 60799 TGTCTTGAAGCCAAAATATTGGTAGTTAAAATCACGATCGTAAACAATAGCCGAGTTAAG 60740 Score = 89.7 bits (98), Expect = 7e-13 Identities = 686/1099 (62%), Gaps = 31/1099 (3%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| ||||| || || | | || || || |||||||| || ||||| || Sbjct 62656 GTGAATTGAATTGGAGCAGACGCTGCCATGGTTCGGAGGTAGTACATCCCGGTTTTCAGG 62597 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || || |||||||| ||| ||||| || || | |||| | || || | Sbjct 62596 CCCAGCTTCCATCCGGCAAAGTGCATGCTGGTGATTTTGCCCATGGTGGGCTCCTTCAAG 62537 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 |||||||||| |||||| || |||||||| || || | || |||||||| | | Sbjct 62536 TGGATATTCAGAGATTGGGACTGGTCGATGAATGCACCACGATCGGCAGCCATCTGAACA 62477 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || | || | |||||||| | || ||||| | | |||||||| | || | Sbjct 62476 ATGGTTCTCTGAGAGATTTCCCACACCGTCTTATAGAGTGCTTTAATATCCGCAGGGATA 62417 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | | ||||| || || || || || || || || | ||||| || | || | Sbjct 62416 TTGGGGATGTTCTGGATCGAACCGCCTTCAGCAATGATACGGTTCTTCATATTGTCCGAC 62357 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || | ||| | | || | || || || ||||| ||||| || || || Sbjct 62356 CACAGACCGAGATCGACGAGATCTTTCAGAAGCCATGGGTTAACGACTTGGAACTCGCCT 62297 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | | || | |||| || || || || || || || | | | || || ||| Sbjct 62296 GCAAGAACCCGTCGAGAATAGATGTTTGATGTGTATGGCTCAAAACATTCGTTGAATCCG 62237 Query 65256 AAAATTTGAGCAGTTGAT-GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 | || ||| | | || | ||||| ||||||||||| || | | ||| || | | ||| Sbjct 62236 AGGATCTGA-CTGGTGCTAGCAGTTGGCATAGGTGCAACGAGCAGACTGTTGCGTACACC 62178 Query 65315 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNN 65374 | | | ||| | | ||| || | ||||||| |||||| || | || || Sbjct 62177 ATGTTTGGCGATGTCCTTTTTCAGCGCGTCCCAATCCCAAAGGTCAGTTGGCGTCACGTT 62118 Query 65375 NNNNNNNNNNNNTTGTAGAATACC----GTTACTGGCGTACGATCCTACATATGTATCGT 65430 || | | |||| | ||| || || ||| | || || || | Sbjct 62117 CCACATATCATACTGCAAAGTACCCTGAGATACAGG----AGAGCCTTCGTAGGTCTCAT 62062 Query 65431 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 65490 | || || || | || | || ||| ||| || || | | |||||| |||| Sbjct 62061 AGGGCCCGTCAACTTTGGCGATATCGCAAGACGCGGTCAAAGCCGCATGATAAATTGTTT 62002 Query 65491 CGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG-A 65549 | ||||||| |||| | | | || || | ||||||||| ||| || | | Sbjct 62001 CAAAGATCTGAATATTCAACTGCTTAGCCTCGGGCGAATCAAATGG-CAATCGGAGCGCA 61943 Query 65550 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 65609 | || || || || | ||||| || |||| ||||||| | ||| | |||| Sbjct 61942 AGGAAAGCATCGGCAAGACCTTGGACGCCAACCGCGATAGGCCGATGACGGAAATTACTC 61883 Query 65610 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 65669 | ||||| || | |||||| | || |||| |||||||| || ||||| | |||| Sbjct 61882 TTGCGGGCTTCAGGGACAGGATAGTGGTTGTTATCAATAATTTTGTTCAGATTGCGGACA 61823 Query 65670 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCTCATCTATTACA----- 65723 | |||| || || | || |||| ||| ||| | |||| || | | ||| Sbjct 61822 AGAACTTGAGTAACTTCATGCAATTTGCCAAAGTCATACTCGC-CA-CGA--ACAGGATC 61767 Query 65724 AAC--ATGT--TCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 65779 ||| |||| ||| |||| |||||||| || ||||| || || |||| | | | Sbjct 61766 AACGTATGTGGGCAAGGCAAGCGATGCCAGGTTGCAAACTGCAACTTCATCTGGGGCGGT 61707 Query 65780 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTG-ATGGTTCCTAAATTTTGTTGAT 65838 || | || || || ||||| || || | | | | || ||||| | |||| || | Sbjct 61706 GTACTCGATGATTTCCGTGCAGAGGTT-CGAGCTTCGAATAGTTCCAAGGTTTTTCTGGT 61648 Query 65839 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 65898 | ||||| ||| ||||||||||| ||||| ||||| || |||| || || |||||| Sbjct 61647 TGCTCTTGCGGTTGCACGCATCCTTGTAAAGCATGAACGGGTTACCCGTCTCCGTCTGAG 61588 Query 65899 ATTCTATAATCGCTTTCCA 65917 ||||| || || | ||| Sbjct 61587 CTTCTAGGATGGCATACCA 61569 >seq2704 Length=633058 Score = 95.1 bits (104), Expect = 2e-14 Identities = 297/455 (65%), Gaps = 4/455 (1%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 |||||| || || ||||| || || || || || || || || || || ||||| Sbjct 56137 CATAACACCAGCCTTCTGGTAGTCGCCGACGCGCTTCTCAAAGAAGTTTGTCTTACCGGA 56196 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCC 35973 | || || || |||||||| |||||||| || | ||||||| || ||| | | Sbjct 56197 CAGCGAAATGTTGTCCATGAAGTCGAATGGGTTCGTCGCATTATAGTACTTCTTAT-TAC 56255 Query 35974 CAATTCAGA-AATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 36032 ||| || || ||| || || |||||||| || || ||| ||| | || | | Sbjct 56256 CAAGAGCGACAAGCAACCTGTCGGCGACAAACTCGATGTATTGGCACATGAGTTTGGAGT 56315 Query 36033 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 36092 |||| || | ||| ||||| || | || | ||||||| ||| || ||| | Sbjct 56316 TCATGCCGAGAAGGGCGCAAGGAAGGGCATCGGTCAAGAATTCTTTTTCGATCTCGACAG 56375 Query 36093 CGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGAT-ACAATAAATGTTTAAAC 36151 | ||||| |||| || || | | ||||| | | || | | || || Sbjct 56376 CTTCTGTGATAACAGCCTCGACGGCCTGGGGGCTCGGGCGGTGACGA-AGGTGAGAGAAG 56434 Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 | | ||| || || || ||| || |||||||| | ||| | ||| ||||| || Sbjct 56435 AGAAGACAGGCAAAGTCAGTGTGGAGGCCCTCGTCGCGGGAAATCAGTTCATTGGAGAAG 56494 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 36271 ||||| || ||||| ||||||||||| || ||||| || || || ||||| || ||| Sbjct 56495 GTGAGGCCAGGCATAAGGCCACGCTTCTTCAGCCAGAAGATAGAGGCAAAAGAGCCACTG 56554 Query 36272 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 36306 || || || || || || || |||||||||| ||| Sbjct 56555 AAAAAGATACCCTCAACGGCTGCAAAGGCAACAAG 56589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658150389216160