Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysosporium_20queenslandicum_20[genbank_20GCA_5F001430955.1_202015 -11-03] 2,724 sequences; 32,335,957 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq934 107 2e-18 seq1640 105 7e-18 seq2704 98.7 1e-15 >seq934 Length=187681 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || ||||| | ||| || ||||| | |||| || || || |||||||| ||| Sbjct 10269 GCCACCACGTAATCTCAAGACCAAGTGCAACGTACTTTCCTTCTGGATGTTATAGTCGGA 10210 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| || || ||||||||| | || |||||||| || || || || Sbjct 10209 AAGCGTGCGGCCATCTTCAAGTTGCTTACCAGCAAAAATGAGACGTTGTTGGTCTGGTGG 10150 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||||||| || | | || | |||||| | || || || Sbjct 10149 GATACCCTCCTTATCTTGGATTTTTGTCTTCACGTTGTCGATTGTGTCTGAGGATTCGAC 10090 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | |||||||||||||| || || || |||||||||||| Sbjct 10089 CTCTAACGTAATAGTCTTGCCGGTCAATGTCTTCACAAATATTTGCATA 10041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| ||||||||||| || || | ||||| ||||| ||||| || || Sbjct 10010 GTAGACTCCTTTTGAATGTTGTAGTCTGAGAGTGTGCGACCATCTTCAAGCTGCTTGCCG 9951 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || ||||||||||| || || || || || || ||||| || |||||||||| Sbjct 9950 GCGAAAATTAGACGTTGCTGGTCTGGTGGAATTCCCTCCTTGTC-TTGGATTTTTGTTTT 9892 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | ||||| | | || || |||| || | ||||| |||||||| || Sbjct 9891 AACGTTATCGATCGTGTCTGAAGATTCAACTTCAAGTGTGATTGTCTTTCCGGTCAAGGT 9832 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 9831 CTTGACGAAAATCTGCATA 9813 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | ||| ||||||| || ||||| || |||||||| || || Sbjct 9516 CCGCCACGGAGGCGAAGAACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAG 9457 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| |||||||||||||| |||||| |||||||| || ||||| Sbjct 9456 AGAGTGCGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGGTCAGGAGGG 9397 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| || | || || ||| | | || | || || ||| ||| || Sbjct 9396 ATGCCCTCCTTGTC-CTGGATCTTGGTCTTAACATTGTCGATCGTATCACTGGACTCAAC 9338 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || ||||| || | || || ||||| || ||||| Sbjct 9337 CTCGAGAGTGATGGTTTTGCCCGTGAGAGTCTTCACGAAAATCTGCAT 9290 >seq1640 Length=153026 Score = 105 bits (116), Expect = 7e-18 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 139577 TTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATC 139636 || ||||| ||||||||||||| |||| ||| |||||||| || || ||| | ||| Sbjct 9684 TTCTGAATATTATAATCGCTCAAGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCAAAAATC 9743 Query 139637 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTC 139695 | ||| ||||| || ||||| |||||||| ||||| ||| | || | || | | || Sbjct 9744 AAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTC-CTGAATCTTGCTCTTGACATTGTC 9802 Query 139696 CACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAA 139755 | ||||||| | | ||||||||| | ||| | ||||||||||| | || || ||||| Sbjct 9803 GATTGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 9862 >seq2704 Length=633058 Score = 98.7 bits (108), Expect = 1e-15 Identities = 338/518 (65%), Gaps = 13/518 (3%) Strand=Plus/Minus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| || | || || |||| ||||||||| | ||||||| || || | || | Sbjct 56664 GTTCCTTGCATCCGTAAGAAGGCTGATTGGGCCATTCGATGGATCCAAGACCAGGAATCA 56605 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 ||||||||| | || || || || ||||| || || ||| | ||||| || | Sbjct 56604 ACTTTTGCCCAGCGCCTTGTTGCCTTTGCAGCCGTTGAGGGTATCTTTTTCAGTGGCTCT 56545 Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 ||||| | || || | | || || | ||| | || |||| |||||||| || ||| Sbjct 56544 TTTGCCTCTATCTTCTGGCTGAAGAAGCGTGGCCTTA-TGCCTGGCCTCACCTTCTCCAA 56486 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGT-TTGTATTATAATA 52786 || |||| || |||||||| || | ||||| || ||||| ||| || | || | | Sbjct 56485 TGAACTGATTTCCCGCGACGAGGGCCTCCACACTGACTTTGCCTGTCTTCTCTTCTCTCA 56426 Query 52787 CGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTT--AAAGAGGCCGT 52844 | ||| | | | | | || || | |||| | ||| || || Sbjct 56425 CCTTCGTCACCGCCCGAGCCCCC-----AGGCCGTCGAGGC-TGTTATCACAGAAGCTGT 56372 Query 52845 CGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGC 52904 ||| || |||||||| || || || || || | || | | | ||||||||| | Sbjct 56371 CGAGATCGAAAAAGAATTCTTGACCGATGCCCTTCCTTGCGCCCTTCTCGGCATGAACTC 56312 Query 52905 GACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTG-TTGATGCAGCTCGGTC 52963 | | |||||| | |||||||||||||| || ||||| || ||| || || ||| Sbjct 56311 CAAACTCATGTGCCAATACATCGAGTTTGTCGCCGACAGGTTGCTTGTCGCT-CTTGGTA 56253 Query 52964 AGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGG 53023 | ||| |||||||||||| ||||| || || ||| ||||||| ||||| | Sbjct 56252 ATAAGAAGTACTATAATGCGACGAACCCATTCGACTTCATGGACAACATTTCGCTGTCCG 56193 Query 53024 GCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 | || |||||||| || |||| || || ||||| ||| Sbjct 56192 GTAAGACAAACTTCTTTGAGAAGCGCGTCGGCGACTAC 56155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496047109020800