Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysosporium_20queenslandicum_20[genbank_20GCA_5F001430955.1_202015 -11-03] 2,724 sequences; 32,335,957 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2528 205 1e-47 seq2704 95.1 2e-14 >seq2528 Length=594046 Score = 205 bits (226), Expect = 1e-47 Identities = 586/897 (65%), Gaps = 8/897 (1%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || |||||||| || || ||| | || || || ||||| ||||| | ||| | | Sbjct 61452 TCAAACTCGTCGCCGTAAACATCAGCCAACCCTGGTGCCTCATTGGGACAGAACAAGGTC 61393 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || || || | | | || || |||||||| | ||| || |||| ||||| | ||| Sbjct 61392 CAATCGCCGTTCTTCTCAACCCGCTTCATAAACAAATCTGGGGTCCAGAGAGCAAGAAAG 61333 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCC 72120 ||||| | | ||| ||||| ||||| | |||||| ||||| | || | Sbjct 61332 AGATCACGAGCTCTCACTTCCTCTTTTCCG---TGGTTTTTACGGAGATCCAAAAATTCG 61276 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | ||||| || ||||| ||||| | || ||||| | | || || ||||| || || Sbjct 61275 AAGATATCGGAGTGCCAGGGTTCAAGATAGATGGCGAAGGCACCTGGTCGTTTATTGCCA 61216 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | || | ||| ||||| || | || | | ||| || || || || || Sbjct 61215 CCCTGGTCAACATAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGATGATTCCGTTA 61156 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGC-TAATTGATAG 72299 || | ||||| || || | || ||| ||| ||||||| ||| | || | | || Sbjct 61155 GAGGAGCCATTTGTTCCTGCAATGTAGGAGCCAGTGGCACGGATACGGTGTACATTA-AG 61097 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 ||| || || || || | || || || | ||| || ||| | |||||| ||||| || Sbjct 61096 ACCAATACCACCAGCTGTCTTGGAAATCAGTGCACAGGTTTTGAGCGTATCGTAGATACC 61037 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 || |||||||| ||| |||||| | || |||||| | |||||| | | ||| Sbjct 61036 TTCGATACTATCCTCCTTCATGTCGATGAGGAAACAGGATGCCATTTGTGGCTGTGGAGT 60977 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 |||||| || || | || ||||||||||| || || |||||| |||| | |||||| Sbjct 60976 TCCCGCGTTGAAAAGAGTGGGAGAAGCGTGAGTGAAGAATTTTTGGGACATCAAATTGTA 60917 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 || ||||| || || || ||| || || || ||||| || ||||| | ||| Sbjct 60916 AGTTTCAATCGCCTTCTCAATGTCCTCGCCGTGAATACCAACCGCAACCCGCATAATCAT 60857 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 ||||| || | || | | |||| ||| || ||||| || || || | || Sbjct 60856 GTGCTGCGGACGCTCGGCAACCTTGCCATTGATCCGCAACAGATAAGACCGCTCTAGTGT 60797 Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || |||||||| | ||| ||| || || ||||||| |||| |||| || || | Sbjct 60796 CTTGAAGCCAAAATATTGGTAGTTAAAATCACGATCGTAAACAATAGCCGAGTTAAGCTC 60737 Query 72660 ATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCC 72719 || | || |||| || || || | || || || || | | Sbjct 60736 GTCAGCGTGCTTCATAACAATTTCGTAAGTTTTTTGAGAGATCATAGGTGCTGGGCGGTT 60677 Query 72720 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 72779 || || || || || || | | | ||| || || || | ||| ||||||| || Sbjct 60676 GTTCTTTGGGTTGACGTAATGATAGAGATCGTCAATGACCGAAGAGAATTGTTTTTTCGT 60617 Query 72780 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 | ||| || || || |||||||||||||||||||| || || ||||| |||||||| Sbjct 60616 CTGCTTATGCAGGTTGGATACGGCTATTCTGGCGGCAAGGATTGCATAGTCTGGATG 60560 >seq2704 Length=633058 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||| || ||||| || | ||| | ||| ||||| || ||||| || ||||| ||||| Sbjct 56455 GTGGAGGCCCTCGTCGCGGGAAATCAGTTCATTGGAGAAGGTGAGGCCAGGCATAAGGCC 56514 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 |||||| || ||||| || ||||| ||||| || ||| || ||||| || || || || Sbjct 56515 ACGCTTCTTCAGCCAGAAGATAGAGGCAAAAGAGCCACTGAAAAAGATACCCTCAACGGC 56574 Query 42199 CGCAAAGGCAATAAG 42213 |||||||||| ||| Sbjct 56575 TGCAAAGGCAACAAG 56589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671116347710240