Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysosporium_20queenslandicum_20[genbank_20GCA_5F001430955.1_202015 -11-03] 2,724 sequences; 32,335,957 total letters Query= NC_011287.1 Length=58554 Score E Sequences producing significant alignments: (Bits) Value seq559 390 4e-104 >seq559 Length=35318 Score = 390 bits (432), Expect = 4e-104 Identities = 606/852 (71%), Gaps = 28/852 (3%) Strand=Plus/Plus Query 42795 CAAGTTCAACGACCTCATCCAAAGCCTGCACCGGATCCAGCGGTTCGGCCAAACCCACCC 42854 ||||||||||||| ||||||| | |||||| ||||||| ||| || | ||||| Sbjct 24654 CAAGTTCAACGACTTCATCCAGGCGATCCACCGGCTCCAGCGCTTCCAGCAGTCGCACCC 24713 Query 42855 CTGCACAGCCCATCTCATCCACTCCGAAACCGAACGGGAAGTGGTTCGCATCATCCGCGA 42914 | | | | |||||||| ||||||| || ||||| || || ||| | | | | Sbjct 24714 GGTCGAGGTCGACATCATCCACGCCGAAACTGAGCGGGAGGTCGTGCGCGACCTGCAGGC 24773 Query 42915 GAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATCCACGAATACGG 42974 ||| ||||| | ||| ||| ||| | ||| |||| ||||||| |||||| || Sbjct 24774 GAAGTGGGCGCGTCACGAGGAGCTGAGCGCCCGCATGTCCGAGATCATCCGCGAATATGG 24833 Query 42975 GCTTGACCCCGAGG-CAATCTCGGAAGCGCTGCAACGCTCCATCGGATGCGAACGCATCG 43033 || | | || | | ||||| ||||| | ||||| ||||| ||| || | Sbjct 24834 CCTGCAGCATGACGTCGCCCTCGGC-GCGCTCAAGCGCTCGATCGGCGTCGAGCGGCAGG 24892 Query 43034 AAGCATCCGGCGAGGGATGGCTGTTCGCCAACAACGACTGCGTACCCGAAACCGAGTCGA 43093 | | | ||||| || ||| | | || ||||||||||||| || | | | Sbjct 24893 AGGTCACTGGCGACGGCTGGACGCTGGCGCACAACGACTGCGTCGATGAGGCTGCCCGGC 24952 Query 43094 TGGACGACAACTCGGTGGACCTGATCGTCACCAGCATTCCGTTCTCGAACCACTACGAAT 43153 ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||| | Sbjct 24953 TGGACGAAGGATCGGTCGACCTGATCGTCACCTCCATCCCGTTCAGCAACCACTACGAGT 25012 Query 43154 ACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCCCATTTCTGGGCCCAGA 43213 ||||||||||||||||||||||||||||||| ||||| ||| ||||||| || |||| Sbjct 25013 ACACGCCGAGCTACAACGACTTCGGCCACACGGACGATGACGGGCATTTCTTCGCGCAGA 25072 Query 43214 TGGACTACCTCACGCCGCAACTGCTGCGGGTCCTCGCTCCTGGCCGGATCTATGCCTG-- 43271 |||| | || |||||| | ||||| || | || || || |||||| || ||||| Sbjct 25073 TGGATCATCTGACGCCGAACCTGCTCCGTGCGCTGGCGCCGGGCCGGCTC---GCCTGCA 25129 Query 43272 -CCACGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCAGGCGTCCCCACCGTCT 43330 |||||| |||||||| ||| ||||||| || ||||||| || || || |||||| Sbjct 25130 TCCACGTGAAGGACCGGATCCTGTTCGGTGCAGTGACCGGCGAGGGTGTGCCGACCGTCA 25189 Query 43331 CCCCGTTCCACGCCGAGGCGATCTTTCAC---GGCCGCAAACACGGCTTCGACTACCTCG 43387 |||||||||||| || ||| ||| ||| ||||||||| | | | | | Sbjct 25190 ATCCGTTCCACGCCAAGTGCATCGAGCACTATATGCGC---CACGGCTTCCAGTTCATGG 25246 Query 43388 GCATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCT 43447 ||||||||||||| |||||||| || ||||| || ||||||||||| ||||| ||| | Sbjct 25247 GCATGATCACCGTCGTCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCCTG---T 25303 Query 43448 GGTCCGAGC-AG-TGC--AAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGTT 43503 || | ||| || ||| || |||| ||| ||||||||| ||| ||| |||||||| Sbjct 25304 CGTAC-AGCGAGATGCTGAAGGACGGCACGAAGATGGGCTGCGGCAGCCCCGAATACGTG 25362 Query 43504 CTGCTGTTCCATAAACCGCAGACAGACAGGTCGAAGGGATACGCCGACACCCCCGTCACC 43563 |||||| | | || ||||| | ||| | || || || |||||||| || |||||| Sbjct 25363 CTGCTGATGCGCAAGCCGCAAAGCGACCGCTCACGCGGTTATGCCGACACGCCGGTCACC 25422 Query 43564 AAATCCAAGGACGA---CTACAGCCGTGCCCGTTGGCAGGTGGACGCGCACGCGTTCTGG 43620 || || | ||| |||||||| || || |||||||| ||||| ||||| |||||| Sbjct 25423 AA--GGAACG-CGAGAGCTACAGCCTGGCGCGGTGGCAGGTCGACGCCCACGCCTTCTGG 25479 Query 43621 CGCTCGAGCGGC 43632 ||||| |||||| Sbjct 25480 CGCTCCAGCGGC 25491 Score = 271 bits (300), Expect = 3e-68 Identities = 280/362 (77%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 41491 ATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGACACTGTTCACG 41550 |||| ||| ||||| ||||||||||| ||||| || ||| ||||| ||| ||||| Sbjct 22784 ATCTTCCTGACCAATTACGAGAGCGTCCGCGACGGCAAGGTCGACGTCACAACCTTCACC 22843 Query 41551 GCCGTTTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGGTCCAAGACGTACCAGTCG 41610 ||||| || |||||||||||| | || |||||||||||||| ||||| | |||| || Sbjct 22844 GCCGTCAGCCTGGACGAGGCGAGCATCCTCCGCTCGTTCGGGTCAAAGACCTTCCAGACG 22903 Query 41611 TTCCTGGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCGACGGCCACGCCATCGCCG 41670 |||||| ||| ||||| | |||||| ||||| | |||||||| ||||| || ||||| Sbjct 22904 TTCCTGCCGCTATTCGAGGCGGTGCCGTACCGATTTGTCGCGACCGCCACCCCCTCGCCC 22963 Query 41671 AACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGATGGACACCGGTGCG 41730 ||||| ||||||||||||||||| ||||| |||| ||||| |||||||||||||| Sbjct 22964 AACCGCTACAAGGAGCTGATCCATTACGCCGGTTTCCTCGGCGTGATGGACACCGGCCAA 23023 Query 41731 GCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAACAACCTCACCCTGTACCC 41789 |||||||| || | |||||||| || ||| |||||| | | |||||||| ||||| Sbjct 23024 GCGCTCACCCGCTTCTTCCAGCGCAACAGCGA-GAAGGCGGGCGATCTCACCCTCTACCC 23082 Query 41790 ACACAAGACGAAC--GAGTTTTTCCTGTGGCTCAACACCTGGGCTGCATTCGTCCAACGA 41847 |||||| |||| ||||| | |||||||| || | |||||| | ||| | || || Sbjct 23083 GCACAAG--GAACAAGAGTTCTGGCTGTGGCTGAATAGCTGGGCCGTTTTCCTGCAGCGC 23140 Query 41848 CC 41849 || Sbjct 23141 CC 23142 Score = 105 bits (116), Expect = 3e-18 Identities = 104/133 (78%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 44886 CTGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGA 44945 ||||||| | |||||||||||||| |||||||||||| || | ||| | | ||||| Sbjct 25897 CTGCCCCCTCCAGTTCGACATCGTCGACCGGCTGATCGAGCGATACTCTATGCGCGGCGA 25956 Query 44946 GTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCACTGAAACTT-- 45003 | |||||||||| |||||| |||| || |||||||||||| |||| || || ||| Sbjct 25957 GCTGGTGTTCGATCCGTTCTGCGGCCTCGGCACCGTGCCGATGCGCGC---GATCCTTGC 26013 Query 45004 -GGTCGGCGCGGC 45015 ||||| |||||| Sbjct 26014 CGGTCGCCGCGGC 26026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187245142891808