Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysosporium_20queenslandicum_20[genbank_20GCA_5F001430955.1_202015 -11-03] 2,724 sequences; 32,335,957 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2528 154 2e-32 seq2704 91.5 2e-13 >seq2528 Length=594046 Score = 154 bits (170), Expect = 2e-32 Identities = 368/553 (67%), Gaps = 14/553 (3%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| || || || || |||| | | ||||| || ||||| ||||| | ||| | Sbjct 61453 CTCAAACTCGTCGCCGTAAACATCAGCCAACCCTGGTGCCTCATTGGGACAGAACAAGGT 61394 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 |||||| | | || | || | ||||||| | |||||| |||| ||||| | ||| Sbjct 61393 CCAATCGCCGTTCTTCTCAACCCGCTTCATAAACAAATCTGGGGTCCAGAGAGCAAGAAA 61334 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTA---AGTTCAAGAAAGTC 48301 | ||| | || ||| | ||| || || || || |||| || || | ||| || Sbjct 61333 GAGATCACGAGCTCTCACTTCCTCTTTTCCGTGGTT---TTTACGGAGATCCAAAAATTC 61277 Query 48302 CATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACC 48361 | ||||| | ||||| ||||| | ||| || || | |||||||||||||||| || Sbjct 61276 GAAGATATCGGAGTGCCAGGGTTCAAGATAGATGGCGAAGGCACCTGGTCGTTTATTGCC 61217 Query 48362 TCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATT 48421 || || || | ||| | ||||| ||||| | || | | ||| |||| || || || Sbjct 61216 ACCCTGGTCAACATAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGATGATTCCGTT 61157 Query 48422 TGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA----TTACTAATTG 48477 || ||||| ||||| | ||| || ||| | || | ||| ||| ||| Sbjct 61156 AGAGGAGCCATTTGTTCCTGCAATGTAGGAGCCAGTGGCACGGATACGGTGTAC--ATT- 61100 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 || ||| |||||||| || | || || || || ||||| ||| || ||||| || | Sbjct 61099 -AAGACCAATACCACCAGCTGTCTTGGAAATCAGTGCACAGGTTTTGAGCGTATCGTAGA 61041 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 | ||||| |||||||| || |||| | | || ||||| | |||||| || || Sbjct 61040 TACCTTCGATACTATCCTCCTTCATGTCGATGAGGAAACAGGATGCCATTTGTGGCTGTG 60981 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 |||||| | || || | || ||||| || ||| | || |||| | || | ||| | Sbjct 60980 GAGTTCCCGCGTTGAAAAGAGTGGGAGAAGCGTGAGTGAAGAATTTTTGGGACATCAAAT 60921 Query 48658 TATATGTTTCAAT 48670 | || |||||||| Sbjct 60920 TGTAAGTTTCAAT 60908 >seq2704 Length=633058 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| ||| || || |||||||| | |||| |||||| || || || | Sbjct 56440 ACAGGCAAAGTCAGTGTGGAGGCCCTCGTCGCGGGAAATCAGTTCATTGGAGAAGGTGAG 56499 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 |||||||| || || | || || | |||||| ||||| ||||| || ||| || || Sbjct 56500 GCCAGGCATAAGGCCACGCTTCTTCAGCCAGAAGATAGAGGCAAAAGAGCCACTGAAAAA 56559 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 ||||| || || |||||||| ||||| || | | || || | | || | | || Sbjct 56560 GATACCCTCAACGGCTGCAAAGGCAACAAGGCGCTGGGCAAAAGTTGATTCCTGGTCTTG 56619 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTT 19169 |||||| | ||||||||||||||||| Sbjct 56620 GATCCATCGAATGGCCCAATCAGCCTTCTT 56649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562089660195360