Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysosporium_20queenslandicum_20[genbank_20GCA_5F001430955.1_202015 -11-03] 2,724 sequences; 32,335,957 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq559 161 3e-35 >seq559 Length=35318 Score = 161 bits (178), Expect = 3e-35 Identities = 408/606 (67%), Gaps = 12/606 (2%) Strand=Plus/Plus Query 38812 TTCCTCGGCATTGGTCACAAGTTCAATGACTTCATCCAGGCCGTTCACCGCATCCAGCGA 38871 ||| ||||| | || ||||||||| |||||||||||||| | ||||| ||||||| Sbjct 24637 TTCGTCGGCGTAGGCTTCAAGTTCAACGACTTCATCCAGGCGATCCACCGGCTCCAGCGC 24696 Query 38872 TTTCTCCAGACGCACAAAGTTCGCATCGACCTCATCTACACCGAAGCGGAACGACCGGT- 38930 || | ||| ||||| || ||||| ||||| || ||||| | || || ||| Sbjct 24697 TTCCAGCAGTCGCACCCGGTCGAGGTCGACATCATCCACGCCGAAACTGAGCGGGAGGTC 24756 Query 38931 GCGCGACAACCTCGAAGCCAAATGGCGACGCCACGTGGAGCAGATGGCAATCATGACAGA 38990 | ||| | |||| | || || ||| || |||| ||||| || || |||| | || Sbjct 24757 GTGCG-CGACCTGCAGGCGAAGTGGGCGCGTCACGAGGAGCTGAGCGCCCGCATGTCCGA 24815 Query 38991 TATCATTCGCAAATATGGCCTGTCGTCTG-CGGCGATGGCTGAAACCCTCACGCGCGCCA 39049 ||||| ||| ||||||||||| | || || || | | | |||| |||| | | Sbjct 24816 GATCATCCGCGAATATGGCCTGCAGCATGACGTCGCCCTCGGCG-CGCTCAAGCGCTCGA 24874 Query 39050 TGGGTGTTGAGCGGATCGAAGTTTGCGGCCCGGGCTATCGGCTGGTCAACAATGATTGCG 39109 | || || |||||| || || ||| |||| ||||| |||| || |||| Sbjct 24875 TCGGCGTCGAGCGGCAGGAGGTCACTGGCGACGGCTGGACGCTGGCGCACAACGACTGCG 24934 Query 39110 T-GATGGAG-TGCAAGAAGATGGGCTCCAACAGCGTT-GACCTGATTGTCACATCGATCC 39166 | |||| | ||| | | ||| | | | || | |||||||| ||||| || |||| Sbjct 24935 TCGATGAGGCTGCCCG--GCTGGACGA-AGGATCGGTCGACCTGATCGTCACCTCCATCC 24991 Query 39167 CGTTTTCCACCCAATACGAGTATTCGCCGAACTATGCCGACTTCGGTCATACCGAAGACA 39226 |||| || ||| |||||||| |||||| ||| ||||||||| || || || || Sbjct 24992 CGTTCAGCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACGGACGATG 25051 Query 39227 ATGAGCATTTCTGGCAGCAGATGGATTTCCTCATCCCCGAAT-TGCTGCGGGTTCTGGCG 39285 | | |||||||| |||||||||| || | | ||||| |||| || | |||||| Sbjct 25052 ACGGGCATTTCTTCGCGCAGATGGATCATCTGA-CGCCGAACCTGCTCCGTGCGCTGGCG 25110 Query 39286 CCGGGGCGTGTCGCCGCAATCCATGTGAAGGATCGCATCGTTCCCGGGGGTATGACGGGT 39345 ||||| || ||||| ||||| |||||||| || ||| | ||| | |||| || Sbjct 25111 CCGGGCCGGCTCGCCTGCATCCACGTGAAGGACCGGATCCTGTTCGGTGCAGTGACCGGC 25170 Query 39346 CTGGGGTTTCAAACCGTCTACCCGTTCTCCGACGATTGCATCGCCCGTTTCAAGCGGCAC 39405 ||| | | |||||| | |||||| || | | ||||||| | | | ||| ||| Sbjct 25171 GAGGGTGTGCCGACCGTCAATCCGTTCCACGCCAAGTGCATCGAGCACTATATGCGCCAC 25230 Query 39406 GGGTTC 39411 || ||| Sbjct 25231 GGCTTC 25236 Score = 89.7 bits (98), Expect = 2e-13 Identities = 275/422 (65%), Gaps = 9/422 (2%) Strand=Plus/Plus Query 38021 TGACGAACTACGAGACGGTGCGCGAGGGAAAGCTTGACCCCCGTCTGTTCACTGTCGCGT 38080 |||| || ||||||| || ||||| || ||| | ||| | ||||| | || Sbjct 22791 TGACCAATTACGAGAGCGTCCGCGACGGCAAGGTCGACGTCACAACCTTCACCGCCGTCA 22850 Query 38081 CGCTTGACGAGGCTGCCTGCCTTCGAGGGTTCGGTGGGACAAAGATATTCCGCGAGTTCA 38140 || |||||||| | ||| || |||||| | |||||| |||| |||| Sbjct 22851 GCCTGGACGAGGCGAGCATCCTCCGCTCGTTCGG---GTCAAAGACCTTCCAGACGTTCC 22907 Query 38141 TGCGGCTGTTCGATGGCATCCGGTTCAAGTTCCTCGCCACGGCGACACCGTCACCAAACC 38200 ||| ||| ||||| | | | || | || |||| || || || || || || |||| Sbjct 22908 TGCCGCTATTCGAGGCGGTGCCGTACCGATTTGTCGCGACCGCCACCCCCTCGCCCAACC 22967 Query 38201 AATATGTAGAACTGCTGGCCTATTCCGCATTCCTCGAGGTTATGGATGTCGGCCAGGCAA 38260 || || ||| | || ||| ||||||| || ||||| |||||| || Sbjct 22968 GCTACAAGGAGCTGATCCATTACGCCGGTTTCCTCGGCGTGATGGACACCGGCCAAGCGC 23027 Query 38261 AAACGCGGTTTTTCAAGCGCAATTCGGAAAAGGCCGACACGCTCACCATCCATCCGCATA 38320 || || || ||| ||||||| || ||||| | | |||||| || | ||||| | Sbjct 23028 TCACCCGCTTCTTCCAGCGCAACAGCGAGAAGGCGGGCGATCTCACCCTCTACCCGCACA 23087 Query 38321 AGGAGCATGAGTTCTGGCTGTGGGTCGCAAGCTGGGGACTGTTTGTCCAGAAGCCCTC-- 38378 |||| || ||||||||||||||| | ||||||| | |||| ||| | ||| | | Sbjct 23088 AGGAACAAGAGTTCTGGCTGTGGCTGAATAGCTGGG--CCGTTT-TCCTGCAGCGCCCGA 23144 Query 38379 -CGATCTCGGATGCTCTGATGAAGGTTACGAGCTACCGGAAATTGAGGTGCGCTGGCATG 38437 ||| ||||||| | ||| || || ||||| || || | | ||||||||||| | Sbjct 23145 GCGACCTCGGATTCAGTGACGACGGCTACGATCTGCCCGCGCTCACCGTGCGCTGGCACG 23204 Query 38438 AG 38439 || Sbjct 23205 AG 23206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169799307239232