Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysosporium_20queenslandicum_20[genbank_20GCA_5F001430955.1_202015 -11-03] 2,724 sequences; 32,335,957 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2528 246 4e-60 seq2704 111 2e-19 >seq2528 Length=594046 Score = 246 bits (272), Expect = 4e-60 Identities = 599/901 (66%), Gaps = 16/901 (2%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || || || || || |||||||| |||| || || ||||| ||||| | ||| | | Sbjct 61452 TCAAACTCGTCGCCGTAAACATCAGCCAACCCTGGTGCCTCATTGGGACAGAACAAGGTC 61393 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || | | | | || ||| || |||||||| | ||| || |||| ||||| | |||| Sbjct 61392 CAATCGCCGTTCTTCTCAACCCGCTTCATAAACAAATCTGGGGTCCAGAGAGCAAGAAAG 61333 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 ||||| | | ||| ||| || ||||| ||||| ||||| | ||| || | Sbjct 61332 AGATCACGAGCTCTCACTTCCTCTTTTCCGTGGTTTTTACGGAGATCCAAAAATTCGAAG 61273 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 ||||| || ||||| ||||| ||||| || || | | | || ||||||||||| || ||| Sbjct 61272 ATATCGGAGTGCCAGGGTTCAAGATAGATGGCGAAGGCACCTGGTCGTTTATTGCCACCC 61213 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 || || | || | |||||||| || |||| | ||||| || || || || ||||| Sbjct 61212 TGGTCAACATAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGATGATTCCGTTAGAG 61153 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATA----TTACTAATAGATAG 69872 ||||||||||| | ||| || || | || || ||| ||| | || || Sbjct 61152 GAGCCATTTGTTCCTGCAATGTAGGAGCCAGTGGCACGGATACGGTGTAC-ATTA---AG 61097 Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 ||| || || || || | || || || || ||||| ||| | || || || ||||| Sbjct 61096 ACCAATACCACCAGCTGTCTTGGAAATCAGTGCACAGGTTTTGAGCGTATCGTAGATACC 61037 Query 69933 CTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGT 69992 || || ||||| || |||||| | || |||||| | |||||| | ||| ||| Sbjct 61036 TTCGATACTATCCTCCTTCATGTCGATGAGGAAACAGGATGCCATTTGTGGCTGTGGAGT 60977 Query 69993 TCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTA 70052 |||||| || || | || ||||| ||||||||||| |||||| || | || |||||| Sbjct 60976 TCCCGCGTTGAAAAGAGTGGGAGAAGCGTGAGTGAAGAATTTTTGGGACATCAAATTGTA 60917 Query 70053 TGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACA 70111 |||||||| || || || ||| | | | ||||| || | ||| || ||||| | || Sbjct 60916 AGTTTCAATCGCCTTCTCAATGTCCTCGCCG-TGAATACCAACCGCAACCCGCATAATCA 60858 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 | ||||| || || || | || ||| || |||||| || || || || | Sbjct 60857 TGTGCTGCGGACGCTCGGCAACCTTGCCATTGATCCGCAACAGATAAGACCGCTCTAGTG 60798 Query 70172 TTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTT 70231 | || || |||||||| | ||| ||| || | ||||||| |||| | || || || | Sbjct 60797 TCTTGAAGCCAAAATATTGGTAGTTAAAATCACGATCGTAAACAATAGCCGAGTTAAGCT 60738 Query 70232 TATCCTTATATTTGGTAACTATATCCATAACAGTAGGTGAGATAATCGGAGAT---CGTT 70288 || | || |||| || || | | | ||||| || || | | || | Sbjct 60737 CGTCAGCGTGCTTCATAACAATTTCGTAAGTTTTTTGAGAGATCATAGGTGCTGGGCGGT 60678 Query 70289 TACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGttttt 70348 | || || || || || || | | | ||| || || || | ||| |||||| Sbjct 60677 T---GTTCTTTGGGTTGACGTAATGATAGAGATCGTCAATGACCGAAGAGAATTGTTTTT 60621 Query 70349 ttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGAT 70408 | || | ||| || | || |||| |||||||||||| || || || |||||||| |||| Sbjct 60620 TCGTCTGCTTATGCAGGTTGGATACGGCTATTCTGGCGGCAAGGATTGCATAGTCTGGAT 60561 Query 70409 G 70409 | Sbjct 60560 G 60560 >seq2704 Length=633058 Score = 111 bits (122), Expect = 2e-19 Identities = 335/514 (65%), Gaps = 5/514 (1%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || || ||||| || || ||||| ||||| || || || || || || Sbjct 56137 CATAACACCAGCCTTCTGGTAGTCGCCGACGCGCTTCTCAAAGAAGTTTGTCTTACCGGA 56196 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || || || |||||||| || || || || || |||||||| | || ||| || Sbjct 56197 CAGCGAAATGTTGTCCATGAAGTCGAATGGGTTCGTCGCATTATAGTACTTCTTATTACC 56256 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 | | || ||| || || || ||||| || |||||| ||| | || | || Sbjct 56257 AAGAGCGACAAGCAACCTGTCGGCGACAAACTCGATGTATTGGCACATGAGTTTGGAGTT 56316 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||| || | || || || || || || | || ||||||||||| || || || Sbjct 56317 CATGCCGAGAAGGGCGCAAGGAAGGGCATCGGTCAAGAATTCTTTTTCGATCTCGACAGC 56376 Query 39553 CTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACAT 39612 ||||| || | | || ||| ||||| | || | || || | Sbjct 56377 TTCTGTGATAACAGCCTCGACGGCCTGGGGGCTCGGGCGGTGACGAAGGTGAGAGAAGAG 56436 Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 | ||||| |||||| || |||||||| || | ||| | ||| || || || || Sbjct 56437 AAGACAGGCAAAGTCAGTGTGGAGGCCCTCGTCGCGGGAAATCAGTTCATTGGAGAAGGT 56496 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 ||| |||||||| || |||||||| || ||||| || || | |||||||| ||| || Sbjct 56497 GAGGCCAGGCATAAGGCCACGCTTCTTCAGCCAGAAGATAGAGGCAAAAGAGCCACTGAA 56556 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATG 39792 ||||| || || || |||||||| |||||||| | || | || ||| || | | Sbjct 56557 AAAGATACCCTCAACGGCTGCAAAGGCAACAAGGCGCTGGGCAAAAGTTGATTCCTGGTC 56616 Query 39793 T---ATCCA-CTTCTGTGCCCAATCAGCTTTCTT 39822 | ||||| | || ||||||||||| ||||| Sbjct 56617 TTGGATCCATCGAATG-GCCCAATCAGCCTTCTT 56649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686885410755360