Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2055 123 3e-23 >seq2055 Length=75196 Score = 123 bits (136), Expect = 3e-23 Identities = 337/511 (66%), Gaps = 4/511 (1%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||| | ||| | || ||||| ||||| || || || | | || || |||| Sbjct 73723 TTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTCT 73664 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 ||||||| || || || || |||| | | ||| || |||| | || | Sbjct 73663 CCATGAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTTACCCAAAGCCATGAGGA 73604 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | ||| || || || || || ||||| ||| | | | ||||||| || | ||| Sbjct 73603 GACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCCAAGAGA- 73545 Query 16854 GTACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || |||||||| || ||||| ||| |||||| || |||| ||||| |||| | | Sbjct 73544 GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCAACGGCTTCGGTAATGACA 73485 Query 16913 -CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 || | ||| || || ||| || || || ||||| || | || |||||||| Sbjct 73484 TCTTG-AACGGCTTGCTTGGATGGGCGGTGCTTGAGATGAGAGAAGAGAAGGCATGCGAA 73426 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 |||| || | ||||| || | | ||| |||||||| || || || | |||| ||| Sbjct 73425 ATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCGGCCAT 73366 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 || || ||||| | ||| || || | |||||| || || || ||||| ||||| || Sbjct 73365 GAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTC 73306 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 || | || || |||| | |||| || | || | || |||| | |||||||| Sbjct 73305 AACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGAGTTCTTGTCTTGGATCCATTT 73246 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAA 17182 |||| ||||| || | ||| |||||| Sbjct 73245 GACAGCCCAGTCGGCCTTCTTCTTGATGCAA 73215 Score = 111 bits (122), Expect = 2e-19 Identities = 197/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| || |||||||| || ||| |||||||||| ||||||||||| || || Sbjct 73110 ATATATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATTTGG 73051 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || |||||||||||||| || || | ||||||||||| || ||||| ||| | | Sbjct 73050 AAACCGTAAAAGCATCGTGCCTCTGGGATTTGAACTTCGCCGCTGAATCTTTCAACCAAG 72991 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||| || || |||||| || ||||| || || | | ||| ||||| || Sbjct 72990 TTCTCGTTGACAATTCCGTCGGATGCTGCGAAGAATGCAAGAACATGGGAGATGAAGTAA 72931 Query 17414 TTTTCGTCCGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 ||||| | || || |||||| | | ||| || || | ||| | ||| Sbjct 72930 CGCTCGTCGTCATTGAGTCTGTTGCTCCAGTCGTGAAGATCCTTTGACAAATCGATCTCT 72871 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || | |||||| ||| ||| ||||||| || ||||| | ||| || Sbjct 72870 TCTGCGGTCCAGAAAGATGCCTCTGCCTTCTTGTACATCTGCCAGAT 72824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517528753890720