Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1009 233 2e-56 seq2055 127 2e-24 >seq1009 Length=94825 Score = 233 bits (258), Expect = 2e-56 Identities = 1311/2070 (63%), Gaps = 59/2070 (3%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| || || || || | | |||||||||||||||||||| || || | | Sbjct 24293 GTGAATTGAATAGGTGCCGAGGCAGCCATGGTACGTAGATAGTACATTCCGGTCTTCAAA 24234 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| || |||||||||| ||| | || | ||||| || Sbjct 24233 CCCAATTTCCAACCAGCAAAATGCATAGATGTAATCTTACCCATTGTAGGATCCTTCATG 24174 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || ||||| |||||| ||||||||| || || || | || |||||||||| | Sbjct 24173 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 24114 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || || ||| | |||||||||| || || || | ||| || || |||||| Sbjct 24113 ATTGTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATA 24054 Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | | || || || ||||||||||| | || || | ||||| || | ||| | Sbjct 24053 TTGGGGATGTTTTGGATGGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGAC 23994 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || | | ||| | || | || || |||||||| ||||| |||||||| Sbjct 23993 CAGAGACCCATATCGACAAGGTCTTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 23934 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | | || | || | ||| || || ||| || ||||| | | | ||||| || Sbjct 23933 GCAAGAACACGACGGGAGTAGATGTTTGAGGTGTAAGGTTCGAAACATTCATTGAAGCCA 23874 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284 | |||||| | || ||||| ||||| ||||| || | | || | | ||| Sbjct 23873 AGAATTTGGGATGTGCTAGCAGTAGGCATGGGTGCAACGAGGAGGGAGTTACGGATTCCG 23814 Query 53285 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 53344 | | |||| | || | | ||||||| ||| | ||| | ||| ||| Sbjct 23813 TGTTGCTTGATGGATTGCTTCAAGGAGTCCCAATCCCACAAATCAGTAGGTGTAACACCC 23754 Query 53345 NNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCGTA 53400 ||| || || || ||||| | | ||| ||| || ||||| Sbjct 23753 CACATATCATATTGGAGTTCTCCCTTCGAGACTGGAG----AGCCTTGATAAGTGTCGTA 23698 Query 53401 TGGTCC---TTCCTTCTCAG-CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 53456 ||| || |||||| || || | || | || || || ||| || || | Sbjct 23697 TGGGCCAAGTTCCTTTGCAATCTCG---ACGGATGAGGTC-AAGGCGGCGTGGTAGATAG 23642 Query 53457 TTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG 53515 | ||||| || | | || || | |||| ||||| || || |||||| | ||| Sbjct 23641 TCTCGAAAATTTGGATGTTGAGGTGCTTG-GCTTCTGGGGAGTCGAATGGAAGACG-AAG 23584 Query 53516 AG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 53573 || || ||| || || || | ||||||||||| | | ||||||||||||||| || Sbjct 23583 AGCCAAGAAA-GCATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCGGAAAT 23525 Query 53574 TAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTT 53632 | | |||| | |||||| | ||||| ||||| || || || || || || | |||| Sbjct 23524 T-GCTCTTTCTGGCTTCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAAGTTT 23466 Query 53633 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATTACA 53692 || |||| || | || || || | || || | || ||| | ||| || ||| || Sbjct 23465 CTAACAACAACCTGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCCCTC-ATT-CA 23408 Query 53693 A----AC--ATGTT--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 || ||||| ||| || ||||| |||| ||||| || ||||||| | Sbjct 23407 TGTTGACGAATGTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTG 23348 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 | | || | | || || ||||| | || | || || || | || | || Sbjct 23347 CAGAGTACTCCACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCTTTT 23288 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 | || ||||| ||||| || ||||| || ||||| ||||| || | || || || | | Sbjct 23287 GGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTT 23228 Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTT 53924 | | ||| | ||| | | ||| | ||||||| || || ||| | ||| Sbjct 23227 GAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTGC 23171 Query 53925 CT--CTT-TCGTATAGT--GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA 53979 || ||| ||||| ||| | | | || ||||| || || |||||| |||| Sbjct 23170 CTGCCTTCTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCACCATAAACATCTGCCAA 23113 Query 53980 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 54039 || |||||||| | || ||||| | | ||| ||||||| | | ||||| ||||| Sbjct 23112 GCCTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCAT 23053 Query 54040 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 || |||||||||||||| | || || ||||| | | | | ||| || || || Sbjct 23052 GAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTACC 22993 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 |||||| ||||| |||||| | | || ||| | |||||| || || | ||| | Sbjct 22992 ATGATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAAC 22933 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 | | | | ||||| || ||||| || || || || | ||||| || ||||| || | Sbjct 22932 AGCAAAAGCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAA 22873 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 ||||| | ||| |||| |||||| || || |||||||| || | ||| || || Sbjct 22872 AACTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGCACC 22813 Query 54280 ACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 | | ||||| || | ||| ||||| || || || || | || ||||| | || Sbjct 22812 AGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGC 22753 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 || || || || || || || || || |||||||| ||| |||||| | || || Sbjct 22752 ACAGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAA 22693 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 || || | ||| | ||| |||||| || | || || || || || || Sbjct 22692 GCACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGT 22633 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGAT 54518 ||| | || | || | | || || || |||||||| || ||||| || | | Sbjct 22632 AAAGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCG-T 22574 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 |||| || || || |||||||| | ||| || || || | ||| | | |||| | | Sbjct 22573 GAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCATCGA 22514 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 54636 || | ||| ||| ||| | ||||| || || || || | ||| ||||| || Sbjct 22513 GACGTAGAAGGTATGATCGTTCAAGTGTTTTGAAGCCGAAGTATTGGTAGTTGAAA--TC 22456 Query 54637 TCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC--ATG 54694 ||| || || | |||| | |||||||||| |||| || | | | || ||| | ||| Sbjct 22455 TCGGTCATAGACAATAGCAGAGTTGAGTTCCTCCTCATGTCTCATGAC-GCATTCGAATG 22397 Query 54695 GTAATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAA 54753 | | |||| ||| || ||||| | | |||||| | || || ||| | |||| Sbjct 22396 TT--TCCTTGCTAATCATAGGAGATGGCGTGCCATTTCTTGGGTTTGTATATTGGTATAA 22339 Query 54754 ATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 54813 ||| || || | ||| |||| || |||| |||||| ||||| || || || || Sbjct 22338 ATCGCGGATAACATGCGAGAATTGTTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAAT 22279 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATG 54843 | ||| ||||||||||||||||| ||||| Sbjct 22278 ACGAGCAGCTAGAATGGCATAATCGGGATG 22249 >seq2055 Length=75196 Score = 127 bits (140), Expect = 2e-24 Identities = 350/531 (66%), Gaps = 9/531 (2%) Strand=Plus/Minus Query 23828 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 23887 || |||||| || |||||||| ||||| || | || ||||| || || || ||||| Sbjct 73740 AGCCATAACACCGGCCTTTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACC 73681 Query 23888 TTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAA 23947 | || || || || |||||||| ||| |||| |||||| || |||| | | | Sbjct 73680 AGCCAAGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTT 73621 Query 23948 TCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACA 24007 ||||| | | | | ||| || || ||||| || ||| ||||| | | | Sbjct 73620 ACCCAAAGCCATGAGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGA 73561 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 ||||| || | || | ||||||||| | || | |||||||| || || || Sbjct 73560 GTTCATGCCCAAGAGAGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCAAC 73501 Query 24068 CGCGTCTGTTATAATAGATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATGTTT 24124 || || || || | | |||| || | || ||| | || || | | | ||| Sbjct 73500 GGCTTCGGTAATGACA--TCTTGAACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGAGA 73444 Query 24125 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 24184 || | | |||||||||||| ||| |||||||| || | || | ||||||||| Sbjct 73443 GAAGAGAAGGCATGCGAAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGGA 73384 Query 24185 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 24244 || || ||||||| ||| || |||||||| || ||||| || ||||| || || || || Sbjct 73383 GAAGGTAAGTCCGGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCC 73324 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG-- 24302 || ||||| || ||||| || || || || || | || | || || | || | Sbjct 73323 GGAGAAGAAGATACCTTCAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGAGTT 73264 Query 24303 -CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 |||| || ||||| || |||||| ||||||||||| || | ||||| Sbjct 73263 CTTGTCTTGGATCCATTTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 73213 Score = 91.5 bits (100), Expect = 2e-13 Identities = 222/334 (66%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCA--TTACTATCTTTAACATATGTATCAA 24414 ||||| |||||||| || || || | |||| | || || | || | |||||| || | Sbjct 73155 GTCTCAATAGCATTGAACAGGTATGTCTTTTGAGCTTGCT--CCTTGATATATGTGTCGA 73098 Query 24415 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAAC 24474 | | |||| || |||| || || ||||| || || ||||| || ||||| || | Sbjct 73097 TGAGAAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAAAAGC 73038 Query 24475 ATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTA 24534 ||| ||||| | || || ||||| | |||| ||| | || || || || || | Sbjct 73037 ATCGTGCCTCTGGGATTTGAACTTCGCCGCTGAATCTTTCAACCAAGTTCTCGTTGACAA 72978 Query 24535 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 24594 ||||||| ||||| || || || | ||||| || || || ||||| Sbjct 72977 TTCCGTCGGATGCTGCGAAGAATGCAAGAACATGGGAGATGAAGTAACGCTCGTCGTCAT 72918 Query 24595 TTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 | ||| | || ||| || | | ||| || || | ||| | ||||| | ||||| | Sbjct 72917 TGAGTCTGTTGCTCCAGTCGTGAAGATCCTTTGACAAATCGATCTCTTCTGCGGTCCAGA 72858 Query 24652 ATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 | |||||||||||||| || ||||| | |||||| Sbjct 72857 AAGATGCCTCTGCCTTCTTGTACATCTGCCAGAT 72824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593702274361920