Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2089 127 2e-24 seq2055 127 2e-24 seq2210 105 7e-18 seq1994 87.8 2e-12 >seq2089 Length=24093 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||||||||||||| |||| || || | | Sbjct 11599 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 11658 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| ||||| | ||||| Sbjct 11659 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAA 11718 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| || || || || || || | |||||||| |||||||||| Sbjct 11719 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGACTACAAC 11778 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| |||| || || | ||||| || Sbjct 11779 ATCCAAAAGGAGTCCACTCTCCACTTGGTGTTACG 11813 >seq2055 Length=75196 Score = 127 bits (140), Expect = 2e-24 Identities = 312/468 (67%), Gaps = 4/468 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| |||| |||||||||| ||||| | |||||| | || | || || Sbjct 73213 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATCCAAGACAAGAACTCCACC 73272 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 || | | || || || || ||||| || || || || ||||||| || ||| ||| Sbjct 73273 TTTGCTCAACGTCTCGTCGCTTTCGCTGCTGTTGAAGGTATCTTCTTCTCCGGCTCCTTC 73332 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 ||| |||| || ||||||||||| || || |||||| |||| || || ||| |||||| Sbjct 73333 GCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCAACGAA 73392 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||||||||| | || |||||||| || ||| || || || | || ||| ||| | Sbjct 73393 CTCATCTCCCGTGATGAGGGTCTCCACACCGATTTCGCATGCCTTCTCTTCTCTCATCTC 73452 Query 117209 GTGCAGCGACCGAGCGCGGCGCG-CGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 ||| || || | | || | ||| || || | ||||| || || | ||||| Sbjct 73453 AAGCACCG-CCCATCCAAGCAAGCCGTTCAAGATGTCATTACCGAAGCCGTTGAAATCGA 73511 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGA 117326 ||| ||| | ||||| || || || |||| ||| |||| | || | | | | Sbjct 73512 GCAAGAATTCTTGACCGAGGCTCTTCCTTGTGC-TCTCTTGGGCATGAACTCCAACCTCA 73570 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386 || |||||||||||||||||| || || | || || | | ||| || ||| Sbjct 73571 TGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTCATGGCTTTGGGTAACGACAAAT 73630 Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||||| | ||||||| | ||||| ||| | ||||||||||| Sbjct 73631 TCTACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCTTGG 73678 Score = 118 bits (130), Expect = 1e-21 Identities = 198/285 (69%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| || ||| | || || Sbjct 72824 ATCTGGCAGATGTACAAGAAGGCAGAGGCATCTTTCTGGACCGCAGAAGAGATCGATTTG 72883 Query 116696 TCCAAGGACACGAGCGACTGGGAGC----GCTTGAACGACAACGAGCGCCATTTCATCAA 116751 || ||||| ||||||| ||| | | || ||| ||||||| | |||||| Sbjct 72884 TCAAAGGATCTTCACGACTGG-AGCAACAGACTCAATGACGACGAGCGTTACTTCATCTC 72942 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 || || || || || ||||| || |||||| || ||||||||||| |||| || | Sbjct 72943 CCATGTTCTTGCATTCTTCGCAGCATCCGACGGAATTGTCAACGAGAACTTGGTTGAAAG 73002 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || || || | | ||||| || ||||| ||||| || || ||| || Sbjct 73003 ATTCAGCGGCGAAGTTCAAATCCCAGAGGCACGATGCTTTTACGGTTTCCAAATCATGAT 73062 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||||||| | ||||| |||| || || ||||||||||| || Sbjct 73063 GGAGAACATCCACTCCGAAACATACTCTCTTCTCATCGACACATA 73107 >seq2210 Length=20483 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760 || || || |||||||| || ||||| ||| |||| || ||| | |||||| | | | Sbjct 17566 GTTAAGACTCTCACGGGAAAGACCATTACCCTCGAGGTTGAATCTTCCGACACCATCGAC 17625 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||| || |||| ||||| || |||||||| | || || ||||| | || Sbjct 17626 AACG-TCAAATCGAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAACAACGTTTGAT 17684 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| |||||||| || || || | || || ||| ||| ||||||||||||||||| Sbjct 17685 CTTCGCCGGCAAACAACTCGAGGATGGCCGTACACTCTCCGATTACAACATCCAGAAGGA 17744 Query 40881 GGCCACGCTGCA 40892 | | || || || Sbjct 17745 GTCTACCCTTCA 17756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| || || |||||||| | || |||||| ||| ||| | | | | | |||| Sbjct 17293 TCACCGGAAAGACCATCACTCTTGAGGTCGAATCCAGCGATACCATTGACAATGTCAAAT 17352 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| ||||| || || | ||||| || || | || | ||| |||| Sbjct 17353 CCAAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGCA 17412 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 |||| || || || | |||||| | | ||| |||||||||||||||||| | || || | Sbjct 17413 AACAACTCGAAGATGGTCGCACCTTGAGCGATTACAACATCCAGAAGGAGTCTACTCTCC 17472 Query 40892 A 40892 | Sbjct 17473 A 17473 >seq1994 Length=27662 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | | Sbjct 4069 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 4010 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| || || | || || ||||| | Sbjct 4009 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTTG 3950 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || || |||| |||| || || ||| || ||||||||||| ||| Sbjct 3949 ATCTTCGCTGGAAAGCAATTGGAGGACGGACGTACTCTCTCAGATTACAACATCCAAAAG 3890 Query 40879 G 40879 | Sbjct 3889 G 3889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515202429615040