Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2210 118 2e-21 seq2550 95.1 2e-14 >seq2210 Length=20483 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || ||| | ||| |||| || Sbjct 17782 ATGCAAATCTTCGTCAAGACCCTCACTGGGAAGACAATCACTTTGGAGGTTGAGTCATCG 17841 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || |||||||| || ||||| |||||||||||| Sbjct 17842 GACACCATCGACAATGTGAAGTCCAAGATCCAAGATAAGGAGGGTATCCCACCTGATCAA 17901 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| ||||| || || || || |||||| | || || | ||||| || Sbjct 17902 CAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTTTCGGATTACAAC 17961 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || || |||||||| | ||| | || |||||||| Sbjct 17962 ATCCAAAAGGAATCGACCTTACATTTGGTCCTTCGTCTCCGTGGTGGTAT 18011 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || || || || || | || | ||| | Sbjct 18010 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATTACATTGGAAGTAGAATCGTCA 18069 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | || ||| || || ||||| || || || |||||||||||| Sbjct 18070 GATACTATTGATAATGTTAAGTCGAAGATCCAGGATAAGGAGGGCATTCCACCTGATCAA 18129 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||||||||| || || |||||| | |||| | ||||| ||| Sbjct 18130 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGCAGAACCCTTTCGGATTACAAT 18189 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| ||| || ||||| ||||| | ||| | || |||||| Sbjct 18190 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGT 18237 >seq2550 Length=61157 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 |||| |||||| |||| |||||||||||| | | |||| | || |||| | Sbjct 5126 ACATAAAATTGCGCAAACATATGACAAGGTGGCAAAGCCATCAACTTAATATCTGCCACA 5185 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 ||||| || | || || || ||||| || || || || | ||| | ||| Sbjct 5186 TTCCACGCACTCAAAATAATCCTTCTATCCCACGGATTGTTCTTCAATTTCCACACAATC 5245 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCA 205740 | | | |||||||| || || |||||||| || || ||| || |||||||| Sbjct 5246 TCCGCCAGTTGATCAACACCCTGTCCTGTATAATCCGTCTCTGCATCGATGTATTTAGCG 5305 Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTC 205787 || ||||| ||||||||||| ||||| || ||||||||||||||||| Sbjct 5306 CCGAAATGTCGCCATTGAAATCCATACACAGGACCTAAATCACCTTC 5352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755431409907200