Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2210 125 6e-24 seq2089 123 2e-23 seq1994 89.7 4e-13 >seq2210 Length=20483 Score = 125 bits (138), Expect = 6e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||| | |||||||| | |||||||| || || |||||||||||| Sbjct 17782 TACCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGG 17723 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||||||| ||||| || ||| |||| | ||| || |||||||||| Sbjct 17722 AGAGTGTACGGCCATCCTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAG 17663 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| ||||||||| ||| || ||| || | |||| |||||| | || | Sbjct 17662 GGATGCCTTCCTTGTCTTGAATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAA 17603 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 |||||| ||| | || || || || ||||| || |||| Sbjct 17602 CCTCGAGGGTAATGGTCTTTCCCGTGAGAGTCTTAACAA 17564 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||| | |||||||||| |||||||| || || ||||||||||||| Sbjct 17499 TACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGC 17440 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||||| ||| ||||| ||||| || ||| | || | |||||| || || |||| Sbjct 17439 TCAAGGTGCGACCATCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAG 17380 Query 118630 GTATGCCCTCCTTGTC 118645 | || ||||||||||| Sbjct 17379 GAATTCCCTCCTTGTC 17364 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || ||||| ||||||||||| | |||||| |||||| Sbjct 17990 ACCAAATGTAAGGTCGATTCCTTTTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCC 17931 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || ||||| |||| ||||| || ||||| || || || |||||||| ||| Sbjct 17930 AACTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTATCTTGG 17871 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||||| ||| ||||| | || | || || Sbjct 17870 ATCTTGGACTTCACATTGTCGATGGTGTCCGATGACTCAACCTCCAAAGTGATTGTCTTC 17811 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || || ||||| Sbjct 17810 CCAGTGAGGGTCTTGACGAAGATTTGCAT 17782 >seq2089 Length=24093 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 ||||||||||||| || ||||| ||||| |||||||| ||| | ||||| ||| Sbjct 11810 AACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCT 11751 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||| || ||||| ||| |||| | ||||| || || || || || ||||||||||| Sbjct 11750 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTGTCC 11691 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || || || || | |||| |||||||| ||| ||||||| ||| | ||| Sbjct 11690 TGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTT 11631 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| || || || || || || ||||||||| || Sbjct 11630 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 11595 >seq1994 Length=27662 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| ||||||||||| | ||| || ||||| | || ||||||||| |||| Sbjct 3891 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCCTCCAATTGCTTTCCAGCGAAGATC 3950 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||| || ||||||||||| || ||||||||||| || || || || | ||| Sbjct 3951 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4010 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | | ||||||||| | ||| | || ||||| || || || || || || Sbjct 4011 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 4069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433816631849968