Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2089 105 8e-18 seq2210 96.9 4e-15 >seq2089 Length=24093 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| |||||||| || | ||| ||||||||| || ||||| || | || || || | Sbjct 11814 ACGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCC 11755 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || ||||| || ||||| || | |||||| ||||| | || | | |||||| Sbjct 11754 ATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTT 11695 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | ||||| || || || |||| ||||| Sbjct 11694 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGAT 11635 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||||||| || ||||| || ||||| ||||| Sbjct 11634 GGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11599 >seq2210 Length=20483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || || | | ||| | |||||| ||||| ||||| |||||||||||||||||| Sbjct 18242 TATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAA 18183 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | || || | | || || | |||||| || || || || | ||| || || || Sbjct 18182 TCCGAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCA 18123 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 43130 | || | || |||||| ||| ||| || || | | | | || || |||| Sbjct 18122 GGTGGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGACGAT 18063 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | || ||||| || || || | ||||| |||||||||||||| Sbjct 18062 TCTACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571798987337120