Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2089 129 5e-25 seq2210 109 4e-19 >seq2089 Length=24093 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||| |||||||| || ||| |||||| || |||||||||||| || ||| | || Sbjct 11811 TAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATC 11752 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || ||||| ||||||||||| ||||| ||||||||||| || || | ||||||||||| Sbjct 11751 TTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTGTC 11692 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | || || ||| || | | | ||||| | ||| ||||| | ||| || || Sbjct 11691 CTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGT 11632 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||| || ||||| || ||||| |||||| Sbjct 11631 TTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 11598 >seq2210 Length=20483 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| | |||||||| || || ||||||||| |||||||| ||| || Sbjct 17497 CCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 17438 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | |||| | || || |||||||| |||||||| ||||| ||||||||||| ||||| Sbjct 17437 AAGGTGCGACCATCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAGGA 17378 Query 45230 ACACCCTCCTTGTCC 45244 | |||||||||||| Sbjct 17377 ATTCCCTCCTTGTCC 17363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395062661794684