Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1009 219 4e-52 seq2055 123 2e-23 seq2210 96.9 3e-15 >seq1009 Length=94825 Score = 219 bits (242), Expect = 4e-52 Identities = 502/753 (67%), Gaps = 2/753 (0%) Strand=Plus/Minus Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 |||||||| || ||||| | ||| ||||| |||||| | || | || |||||| Sbjct 23288 TGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTT 23229 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCC 23238 || | |||| || | ||| | | ||||| | | | ||| || ||| ||| Sbjct 23228 TGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGATA-GTCTTGCGACCCTTGCC 23170 Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC 23298 | | | |||||| | ||| | || || || || |||| ||| || |||| ||| Sbjct 23169 TGCCTTCTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCACCATAAACATCTGCCAAGCC 23110 Query 23299 GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358 || ||| | || ||||||||| |||| | || |||||||| || |||| || Sbjct 23109 TGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATGAA 23050 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 ||||| || ||||| | |||||||| || ||||| || || || || || || || Sbjct 23049 TAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTACCATG 22990 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 ||||| | ||| | || || || || ||||||||||| ||||| |||||||| || Sbjct 22989 ATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACAGC 22930 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 ||| || || || | ||| || || || || || || || | ||| ||||||||| | || Sbjct 22929 AAAAGCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAAAC 22870 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTT 23598 || ||||| || || | |||||| || || || || | | ||| | Sbjct 22869 TCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGCACCAGT 22810 Query 23599 TGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658 || || | |||||| || || ||| || || || | || || ||||| || || Sbjct 22809 AGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCACA 22750 Query 23659 TTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 |||| ||||||||| || || || || || ||||| || | ||| | ||| || Sbjct 22749 GATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAGCA 22690 Query 23719 CGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAA 23778 ||| || | ||| |||| || ||| | || ||||| ||||| ||| ||| || ||||| Sbjct 22689 CGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAAA 22630 Query 23779 GTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTAT 23838 ||| |||||||| | || || || ||||| || || || || || ||||| || Sbjct 22629 GTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCGTGAAT 22570 Query 23839 ACCGATGGCGACGCGCATCATCATGTATTGAGG 23871 ||| | ||| || ||||| ||||| | ||| || Sbjct 22569 ACCAACGGCAACACGCATGATCATTTGTTGTGG 22537 >seq2055 Length=75196 Score = 123 bits (136), Expect = 2e-23 Identities = 229/333 (69%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| |||||||| ||||| || ||||||| ||||| | || || Sbjct 72824 ATCTGGCAGATGTACAAGAAGGCAGAGGCATCTTTCTGGACCGCAGAAGAGATCGATTTG 72883 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||| | ||||| || ||| | | || || Sbjct 72884 TCAAAGGATCTTCACGACTGGAGCAACAGACTCAATGACGACGAGCGTTACTTCATCTCC 72943 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || | || || ||||| |||||||| || ||||| |||||||| ||||| |||||| Sbjct 72944 CATGTTCTTGCATTCTTCGCAGCATCCGACGGAATTGTCAACGAGAACTTGGTTGAAAGA 73003 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||||| ||| | | ||||| ||||||||||||| || ||| | || Sbjct 73004 TTCAGCGGCGAAGTTCAAATCCCAGAGGCACGATGCTTTTACGGTTTCCAAATCATGATG 73063 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAACGA 57865 || ||| | || || |||| || || || |||||||| || || | ||||| ||| Sbjct 73064 GAGAACATCCACTCCGAAACATACTCTCTTCTCATCGACACATATATCAAGGAGCAAGCT 73123 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAAC 57898 | | | || || |||||||| || || || || Sbjct 73124 CAAAAGACATA-CCTGTTCAATGCTATTGAGAC 73155 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 |||||||| || ||| | |||||||||| || | | |||| || || | | Sbjct 73225 AAGAAGGCCGACTGGGCTGTCAAATGGATCCAAGACAAGAACTCCACCTTTGCTCAACGT 73284 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || |||| ||||| || || |||||||| ||||| || ||| ||| || | || || Sbjct 73285 CTCGTCGCTTTCGCTGCTGTTGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTC 73344 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| || || || ||| |||| || || || |||||| | || || || Sbjct 73345 TGGCTCAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCAACGAACTCATCTCCCGT 73404 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCA 58138 || ||||||||||| || ||||| || ||||| | | |||||| Sbjct 73405 GATGAGGGTCTCCACACCGATTTCGCATGCCTTCTCTTCTCTCA 73448 >seq2210 Length=20483 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || |||||||| || || || || || ||| |||| |||||| | ||||||| |||| Sbjct 17566 GTTAAGACTCTCACGGGAAAGACCATTACCCTCGAGGTTGAATCTTCCGACACCATCGAC 17625 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | |||||| || || |||||||||||| | || ||||| || || ||| | || Sbjct 17626 AACGTCAAATCGAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAACAACGTTTGATC 17685 Query 31325 TTCGCTGGCAAACAGTT---GGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 ||||| |||||||| | ||| | | || ||| | |||||| ||||| || || Sbjct 17686 TTCGCCGGCAAACAACTCGAGGATGGCCGTA-CACTCT--CCGATTACAACATCCAGAAG 17742 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| |||| || ||||| | || |||| Sbjct 17743 GAGTCTACCCTTCACTTGGTCCTCAGACTTCGTGGTGGTA 17782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445751890303680