Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2055 105 1e-17 seq1009 105 1e-17 >seq2055 Length=75196 Score = 105 bits (116), Expect = 1e-17 Identities = 342/527 (65%), Gaps = 8/527 (2%) Strand=Plus/Plus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAA---CGATTTGGC 101907 |||||||||||||| | |||||| | || ||||| ||| ||| || | || || Sbjct 73218 CATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATCCAAGACAAGAACTCCACCTTTGC 73277 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||| | || || || ||||| |||||||| |||||||| || | ||||| || Sbjct 73278 TCAACGTCTCGTCGCTTTCGCTGCTGTTGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTC 73337 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 ||| |||||| ||||||| | ||| | || | || || |||| |||||| || |||| Sbjct 73338 CATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCAACGAACTCAT 73397 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087 || | || || ||||| || ||| || |||||| | || || | | | Sbjct 73398 CTCCCGTGATGAGGGTCTCCACACCGATTTCGCATGCCTTCTCTTCTCTCA---TCTCAA 73454 Query 102088 TGATACCCCATCAAGAGAAAG-GATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAAC 102146 | |||||| | || ||| ||| || | | || |||||||| ||| || | Sbjct 73455 GCACCGCCCATCCA-AGCAAGCCGTTCAAGATGTCATTACCGAAGCCGTTGAAATCGAGC 73513 Query 102147 AAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGA 102206 ||||||| | || | | || ||| | | |||| ||||||| ||| | |||| Sbjct 73514 AAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTCTTGGGCATGAACTCCAACCTCATGA 73573 Query 102207 GCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACT 102266 || ||||| || || || || ||| || | | | |||| || || || Sbjct 73574 AGCAATACATCGAGTTCGTTGCTGATCGTCTCCTCATGGCTTTGGGTAACGACAAATTCT 73633 Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACT 102326 | || ||||||||| ||| |||||||| || || ||| | | ||||||||||| Sbjct 73634 ACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCTTGGCTGGTAAGACCAACT 73693 Query 102327 TTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGGCT 102373 | || || |||||||| | || || ||| ||| || |||||| Sbjct 73694 TCTTCGAGAAGAGAGTTGGTGATTACCAAAAGGCCGGTGTTATGGCT 73740 >seq1009 Length=94825 Score = 105 bits (116), Expect = 1e-17 Identities = 176/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833 |||| || || || | || |||||| |||| ||||| || || ||| | ||| Sbjct 22796 TGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCACAGATCTTCAAAGTG 22737 Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG- 94892 || |||||||| ||||| ||||| || | | | | | ||||||||||| |||||||| Sbjct 22736 TCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAGCACGATGAAAGTTGT 22677 Query 94893 GGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952 | |||| || || | || ||||| ||||| ||||| ||||| || | |||| Sbjct 22676 GCTTGTG-GAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAAAGTACTTGTTCGA 22618 Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012 ||| | | ||||||||| || || || ||| || |||||||| || || || || Sbjct 22617 CATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCAACGGCAAC 22558 Query 95013 ACGCATAATCAT 95024 |||||| ||||| Sbjct 22557 ACGCATGATCAT 22546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989550983766820