Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05]
2,604 sequences; 40,732,201 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1009 242 5e-59
seq2055 145 1e-29
>seq1009
Length=94825
Score = 242 bits (268), Expect = 5e-59
Identities = 1311/2067 (63%), Gaps = 53/2067 (3%)
Strand=Plus/Minus
Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105
||||||||||| || || || || | | |||||||||||||||||||| || || | |
Sbjct 24293 GTGAATTGAATAGGTGCCGAGGCAGCCATGGTACGTAGATAGTACATTCCGGTCTTCAAA 24234
Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165
|| | |||| || |||||||||| || | || | ||||| ||
Sbjct 24233 CCCAATTTCCAACCAGCAAAATGCATAGATGTAATCTTACCCATTGTAGGATCCTTCATG 24174
Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225
|| || ||||| |||||| ||||||||| || || || | || |||||||||| |
Sbjct 24173 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 24114
Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285
|| || ||| | |||||||||| || || || | ||| || || ||||||
Sbjct 24113 ATTGTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATA 24054
Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342
|| | | || || |||||||||||||| | || || | ||||| || | ||| |
Sbjct 24053 TTGGGGATGTTTTGGATGGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGAC 23994
Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402
|| | | ||| | || | || || || ||||| ||||||||||||||
Sbjct 23993 CAGAGACCCATATCGACAAGGTCTTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 23934
Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462
| | || | || | ||| || || ||| || ||||| | | ||||| ||
Sbjct 23933 GCAAGAACACGACGGGAGTAGATGTTTGAGGTGTAAGGTTCGAAACATTCATTGAAGCCA 23874
Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522
| |||||| | || ||||| ||||| ||||| || | | || | | |||
Sbjct 23873 AGAATTTGGGATGTGCTAGCAGTAGGCATGGGTGCAACGAGGAGGGAGTTACGGATTCCG 23814
Query 62523 TATGTTCTGATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANN 62581
| | |||| | ||| || || |||||| ||| | ||| | ||| ||||
Sbjct 23813 TGTTGCTTGATGGATTGCTTCAAGGAGT-CCCAATCCCACAAATCAGTAGGTGTAACACC 23755
Query 62582 NNNNNNNNNATATTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCAT 62637
|||||| || || || ||||| | | ||| ||| || || |
Sbjct 23754 CCACATATCATATTGGAGTTCTCCCTTCGAGACTGGAG----AGCCTTGATAAGTGTCGT 23699
Query 62638 ATGGTCC---TTCCTTCTCAG-CTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATG 62693
|||| || |||||| || || | || | || || || ||| || ||
Sbjct 23698 ATGGGCCAAGTTCCTTTGCAATCTCG---ACGGATGAGGTC-AAGGCGGCGTGGTAGATA 23643
Query 62694 GTTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 62752
|| || || || | | || || | |||| ||||| ||| || |||||| | ||
Sbjct 23642 GTCTCGAAAATTTGGATGTTGAGGTGCTTG-GCTTCTGGGGAGTCGAATGGAAGACG-AA 23585
Query 62753 GAG--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62810
||| || ||| || || || | ||||||||||| | | ||||||||||||||| |
Sbjct 23584 GAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCGGAAA 23526
Query 62811 TTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62869
|| | |||| | |||||| | ||||| ||||| || || || || || || | ||
Sbjct 23525 TT-GCTCTTTCTGGCTTCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAAGTT 23467
Query 62870 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT 62926
||| |||| || | || || || | || || | || ||| | || | ||| ||
Sbjct 23466 TCTAACAACAACCTGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCCCTCATTCAT 23407
Query 62927 -TACAAACATGTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATC 62983
| | ||||| ||| || | ||| |||| ||||| || ||||||| | |
Sbjct 23406 GTTGACGAATGTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGC 23347
Query 62984 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 63043
| || | | || || ||||| | || | ||||| || | || | |||
Sbjct 23346 AGAGTACTCCACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCTTTTG 23287
Query 63044 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103
|| ||||| ||||| || ||||| || ||||| ||||| ||| | || || || | ||
Sbjct 23286 GTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTG 23227
Query 63104 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC 63163
|| ||| | ||| | | ||| | | ||||||| || || ||| | | | |
Sbjct 23226 AGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTGCC 23170
Query 63164 T--CTT-TCGTATAGA--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63218
| ||| ||||| ||| | | | |||||||| || || |||||| ||||
Sbjct 23169 TGCCTTCTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCACCATAAACATCTGCCAAG 23112
Query 63219 CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63278
| |||||||| | || ||||| | | ||| ||||||| | | ||||| |||||
Sbjct 23111 CCTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATG 23052
Query 63279 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338
|| |||||||||||||| | || || ||||| | || | | ||| || || ||
Sbjct 23051 AATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTACCA 22992
Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398
|||||| ||||| |||||| | | || ||| | |||||| || || | ||| |
Sbjct 22991 TGATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACA 22932
Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458
|| | | | ||||| || ||||| || || || || | ||||| || ||||| || ||
Sbjct 22931 GCAAAAGCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAA 22872
Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518
|||| | ||| |||| ||||||||| || | ||||||||||| | ||| || | |||
Sbjct 22871 ACTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGCACCA 22812
Query 63519 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578
| ||||| || | ||| ||||| || || || || | || ||||| | ||
Sbjct 22811 GTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCA 22752
Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638
|| || || ||||| || || || || || ||||| || |||||| | || ||
Sbjct 22751 CAGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAG 22692
Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698
|| || | ||| | | ||| |||||| || | || || || || || |||
Sbjct 22691 CACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTA 22632
Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATG 63757
|| | || | || | | || || || || ||||| || ||||| || | ||
Sbjct 22631 AAGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCG-TG 22573
Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817
||| || || || |||||||| | ||| || || || | ||| ||| ||| | |
Sbjct 22572 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCATCGAG 22513
Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 63875
| | ||| ||| ||| | ||||| || || || || | ||| ||||| |||
Sbjct 22512 ACGTAGAAGGTATGATCGTTCAAGTGTTTTGAAGCCGAAGTATTGGTAGTTGAAA--TCT 22455
Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTA 63935
|| || || | |||| | || ||||| | |||| || | | | || || | ||
Sbjct 22454 CGGTCATAGACAATAGCAGAGTTGAGTTCCTCCTCATGTCTCATGACGCATTCGAATGT- 22396
Query 63936 ATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63994
| |||| ||| || ||||| | | |||||| | || || ||| | | |||||||
Sbjct 22395 TTCCTTGCTAATCATAGGAGATGGCGTGCCATTTCTTGGGTTTGTATATTGGTATAAATC 22336
Query 63995 CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCT 64054
|| || | ||| |||| || |||| ||||| ||||| || | || || |
Sbjct 22335 GCGGATAACATGCGAGAATTGTTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACG 22276
Query 64055 GGCGGCTAGAATGGCATAATCCGGATG 64081
|| ||||||||||||||||| |||||
Sbjct 22275 AGCAGCTAGAATGGCATAATCGGGATG 22249
>seq2055
Length=75196
Score = 145 bits (160), Expect = 1e-29
Identities = 355/532 (67%), Gaps = 11/532 (2%)
Strand=Plus/Minus
Query 33275 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33334
|| |||||| || |||||||| ||||| || | || ||||| || || || || ||
Sbjct 73740 AGCCATAACACCGGCCTTTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACC 73681
Query 33335 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA-AAttttt--tt 33391
|||| || || || |||||||| || || || |||||| ||||| ||||| | ||
Sbjct 73680 AGCCAAGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTT 73621
Query 33392 AAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTC 33451
| ||||| | | | | ||| || ||||| || || ||| ||||| | |
Sbjct 73620 A---CCCAAAGCCATGAGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTT 73564
Query 33452 ACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGA 33511
| ||||| || | ||| | ||||||||| | || | |||||||| || ||
Sbjct 73563 GGAGTTCATGCCCAAGAGAGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTC 73504
Query 33512 TACCGCATTTGTTATAATAAATCTAACGGTTT-CTTCACTCGGTGGATGTAATAAATGTT 33570
|| || | || || | | | ||||| || ||| | || || || | |||
Sbjct 73503 AACGGCTTCGGTAATGACATCTTGAACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGAG 73445
Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630
|| | | |||||||||||| ||| |||||||| || | || | |||||| |
Sbjct 73444 AGAAGAGAAGGCATGCGAAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGG 73385
Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33690
| || || ||||||| ||| || |||||||| || ||||| || ||||| ||||| || |
Sbjct 73384 AGAAGGTAAGTCCGGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGC 73325
Query 33691 CGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG- 33749
|||| |||||||| ||||| || ||||| || || | || | | || | || |
Sbjct 73324 CGGAGAAGAAGATACCTTCAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGAGT 73265
Query 33750 --CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799
|||| || ||||| || |||||| ||||||||||| || | |||||
Sbjct 73264 TCTTGTCTTGGATCCATTTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 73213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629797099437120
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