Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1009 136 4e-27 >seq1009 Length=94825 Score = 136 bits (150), Expect = 4e-27 Identities = 388/589 (66%), Gaps = 8/589 (1%) Strand=Plus/Minus Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 || |||||||||||| || ||||| |||| ||||||| | | ||||| || || | | Sbjct 23114 AAGCCTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTC 23055 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTT 38084 || |||| |||||| | ||| || || ||| || | ||| | | | |||||| || Sbjct 23054 ATGAATAGATCAGGAATCCACAAGGC-GTAGAAGAGATCGCGTGCACGAACTTCTTCCTT 22996 Query 38085 CCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144 || |||||| | || || || ||||| | ||| || |||||||| || | || Sbjct 22995 ACCATGATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTA 22936 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 || | | || || || | || | ||| || || | || |||||| | ||||| || Sbjct 22935 AACAGCAAAAGCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTT 22876 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 | | || | |||||| || ||||| ||||| || || || |||| | || || | Sbjct 22875 GAAAACTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGC 22816 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324 ||| |||| || || | || | || || ||||| |||| ||||| || | Sbjct 22815 ACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCAT 22756 Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384 || || || || || || | ||||| || ||||| || ||||| || || | || Sbjct 22755 GGCACAGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCAT--GTCG-AT 22699 Query 38385 AA--AACAACTA-GACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGC 38441 | || || | || | ||| | |||||| || || || | ||| || || || Sbjct 22698 GAGGAAGCACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGC 22639 Query 38442 ATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACC 38501 |||| | || | || | ||||| | ||||||||||| || || || |||||| | Sbjct 22638 ATGTGTAAAGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATC 22579 Query 38502 GCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 ||||||||||| | | || | ||| | ||| |||||||| | |||| Sbjct 22578 ACCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 22530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468509549517760