Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1009 244 1e-59 seq2055 113 6e-20 >seq1009 Length=94825 Score = 244 bits (270), Expect = 1e-59 Identities = 1311/2068 (63%), Gaps = 55/2068 (3%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| || || || || | | |||||||||||||||||||| || || | | Sbjct 24293 GTGAATTGAATAGGTGCCGAGGCAGCCATGGTACGTAGATAGTACATTCCGGTCTTCAAA 24234 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | |||| || |||||||||| || | || | ||||| || Sbjct 24233 CCCAATTTCCAACCAGCAAAATGCATAGATGTAATCTTACCCATTGTAGGATCCTTCATG 24174 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || ||||| |||||| ||||||||| || || || | || |||||||||| | Sbjct 24173 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 24114 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || ||| | |||||||||| || || || | ||| || || |||||| Sbjct 24113 ATTGTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATA 24054 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | | || || |||||||||||||| || || || | ||||| || | ||| | Sbjct 24053 TTGGGGATGTTTTGGATGGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGAC 23994 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || | | ||| | || | || || |||||||| ||||| |||||||| Sbjct 23993 CAGAGACCCATATCGACAAGGTCTTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 23934 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | | || | || | ||| || || ||| || ||||| | | | ||||| || Sbjct 23933 GCAAGAACACGACGGGAGTAGATGTTTGAGGTGTAAGGTTCGAAACATTCATTGAAGCCA 23874 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315 | |||||| | || ||||| ||||| ||||| || | | || | | ||| Sbjct 23873 AGAATTTGGGATGTGCTAGCAGTAGGCATGGGTGCAACGAGGAGGGAGTTACGGATTCCG 23814 Query 65316 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 65375 | | |||| | || | | ||||||| ||| | ||| | ||| ||| Sbjct 23813 TGTTGCTTGATGGATTGCTTCAAGGAGTCCCAATCCCACAAATCAGTAGGTGTAACACCC 23754 Query 65376 NNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCGTA 65431 ||| || || || ||||| | | ||| ||| || ||||| Sbjct 23753 CACATATCATATTGGAGTTCTCCCTTCGAGACTGGAG----AGCCTTGATAAGTGTCGTA 23698 Query 65432 TGGTCC---TTCCTTCTCAG-CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 65487 ||| || |||||| || || | || | || || || ||| || || | Sbjct 23697 TGGGCCAAGTTCCTTTGCAATCTCG---ACGGATGAGGTC-AAGGCGGCGTGGTAGATAG 23642 Query 65488 TTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG 65546 | ||||| || | | || || | |||| ||||| || || |||||| | ||| Sbjct 23641 TCTCGAAAATTTGGATGTTGAGGTGCTTG-GCTTCTGGGGAGTCGAATGGAAGACG-AAG 23584 Query 65547 AG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 65604 || || ||| || || || | ||||||||||| | | ||||||||||||||| || Sbjct 23583 AGCCAAGAAA-GCATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCGGAAAT 23525 Query 65605 TAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 65663 | | |||| | |||||| | ||||| ||||| || || || || || || | ||| Sbjct 23524 T-GCTCTTTCTGGCTTCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAAGTTT 23466 Query 65664 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTAT- 65719 || |||| || | || || || | || || | || ||| | || ||||| || Sbjct 23465 CTAACAACAACCTGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCCCTCATTCATG 23406 Query 65720 TACAAACATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 | | ||||| ||| || | ||| |||| ||||| || ||||||| | | Sbjct 23405 TTGACGAATGTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCA 23346 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | || | | || || ||||| | || | || || || | || | ||| Sbjct 23345 GAGTACTCCACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCTTTTGG 23286 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 || ||||| ||||| || ||||| || ||||| ||||| ||| | || || || | ||| Sbjct 23285 TTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGA 23226 Query 65898 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT 65957 | ||| | ||| | | ||| | | ||||||| || || ||| | ||| || Sbjct 23225 GCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTGCCT 23169 Query 65958 --CTT-TCGTATAGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 66012 ||| ||||| ||| | | | |||||||| || || |||||| |||| | Sbjct 23168 GCCTTCTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCACCATAAACATCTGCCAAGC 23111 Query 66013 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 66072 | |||||||| | || ||||| | | ||| ||||||| | | ||||| ||||| | Sbjct 23110 CTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATGA 23051 Query 66073 AGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 | |||||||||||||| | || || | ||| | | | | ||| || || || Sbjct 23050 ATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTACCAT 22991 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 |||||| ||||| |||||| | | || ||| |||||| || || | ||| | | Sbjct 22990 GATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACAG 22931 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | | | ||||| || ||||| || || || || | ||||| || ||||| || ||| Sbjct 22930 CAAAAGCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAAA 22871 Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 66312 ||| | ||| |||| |||||| || || | |||||||| || | ||| || ||| Sbjct 22870 CTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGCACCAG 22811 Query 66313 TTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 66372 | ||||| || | ||| ||||| || || || || | || ||||| | || | Sbjct 22810 TAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCAC 22751 Query 66373 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 66432 | || || || || || || || || |||||||| ||| |||||| | || || | Sbjct 22750 AGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAGC 22691 Query 66433 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 66492 | || | ||| | ||| |||||| || | || || || || || |||| Sbjct 22690 ACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAA 22631 Query 66493 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 66551 | | || | || | | || || || || ||||| || ||||| || | ||| Sbjct 22630 AGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCG-TGA 22572 Query 66552 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 66611 || || || || |||||||| | ||| || || || | ||| | | |||| | | Sbjct 22571 ATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCATCGAGA 22512 Query 66612 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTC 66669 | | ||| ||| ||| | ||||| || || || || | ||| ||||| |||| Sbjct 22511 CGTAGAAGGTATGATCGTTCAAGTGTTTTGAAGCCGAAGTATTGGTAGTTGAAA--TCTC 22454 Query 66670 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC--ATGGT 66727 | || || | |||| | |||||||||| |||| || | | | || ||| | ||| | Sbjct 22453 GGTCATAGACAATAGCAGAGTTGAGTTCCTCCTCATGTCTCATGAC-GCATTCGAATGTT 22395 Query 66728 AATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAAT 66786 | |||| ||| || ||||| | | |||||| | || || ||| | | |||||| Sbjct 22394 --TCCTTGCTAATCATAGGAGATGGCGTGCCATTTCTTGGGTTTGTATATTGGTATAAAT 22337 Query 66787 CCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTC 66846 | || || | ||| |||| || |||| |||||| ||||| || || || || | Sbjct 22336 CGCGGATAACATGCGAGAATTGTTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATAC 22277 Query 66847 TAGCGGCTATAATGGCATAATCCGGATG 66874 ||| |||| |||||||||||| ||||| Sbjct 22276 GAGCAGCTAGAATGGCATAATCGGGATG 22249 >seq2055 Length=75196 Score = 113 bits (124), Expect = 6e-20 Identities = 348/532 (65%), Gaps = 11/532 (2%) Strand=Plus/Minus Query 35851 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 35910 || |||||| || |||||||| ||||| || | || ||||| || || || ||||| Sbjct 73740 AGCCATAACACCGGCCTTTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACC 73681 Query 35911 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATA-AAttttt--tt 35967 | || || || || |||||||| |||||||| ||| || || || ||||| | || Sbjct 73680 AGCCAAGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTT 73621 Query 35968 AAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTC 36027 | ||||| | | | | ||| || || || || || ||| ||||| | | Sbjct 73620 A---CCCAAAGCCATGAGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTT 73564 Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087 | ||||| || | || | ||||||||| | || | |||||||| || || Sbjct 73563 GGAGTTCATGCCCAAGAGAGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTC 73504 Query 36088 GACCGCGTCTGTTATAATAGATATTACTGTTT-CTTCACTCGGTGGATACAATAAATGTT 36146 || || || || || | | | || | || ||| | || || | | | ||| Sbjct 73503 AACGGCTTCGGTAATGACATCTTGAACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGAG 73445 Query 36147 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 36206 || | | |||||||||||| ||| |||||||| || | || | |||||||| Sbjct 73444 AGAAGAGAAGGCATGCGAAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGG 73385 Query 36207 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 36266 | || || ||||||| ||| || |||||||| || ||||| || ||||| || || || | Sbjct 73384 AGAAGGTAAGTCCGGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGC 73325 Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG--- 36323 | || ||||| || ||||| || || || || || | || | | || | || Sbjct 73324 CGGAGAAGAAGATACCTTCAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGAGT 73265 Query 36324 CACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 |||| || ||||| || |||||| ||||||||||| || | ||||| Sbjct 73264 TCTTGTCTTGGATCCATTTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 73213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658151376475360