Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1009 289 4e-73 seq2055 145 1e-29 >seq1009 Length=94825 Score = 289 bits (320), Expect = 4e-73 Identities = 1328/2069 (64%), Gaps = 57/2069 (3%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||||||||| || || || || | | |||||||||||||||||||| || || | | Sbjct 24293 GTGAATTGAATAGGTGCCGAGGCAGCCATGGTACGTAGATAGTACATTCCGGTCTTCAAA 24234 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| || ||||||||| || | || | ||||| || Sbjct 24233 CCCAATTTCCAACCAGCAAAATGCATAGATGTAATCTTACCCATTGTAGGATCCTTCATG 24174 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || ||||| |||||| ||||||||| || || || | || |||||||||| | Sbjct 24173 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 24114 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || ||| | |||||||||| || || || | ||| || || |||||| Sbjct 24113 ATTGTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATA 24054 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | | || || |||||||||||||| || || || | ||||| || | ||| | Sbjct 24053 TTGGGGATGTTTTGGATGGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGAC 23994 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | ||| | || | || || |||||||| ||||| |||||||| Sbjct 23993 CAGAGACCCATATCGACAAGGTCTTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 23934 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | | || | || | ||| || || ||| || ||||| | ||||||| || Sbjct 23933 GCAAGAACACGACGGGAGTAGATGTTTGAGGTGTAAGGTTCGAAACATTCATTGAAGCCA 23874 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | |||||| | || || || ||||| ||||| || | | || | | ||| Sbjct 23873 AGAATTTGGGATGTGCTAGCAGTAGGCATGGGTGCAACGAGGAGGGAGTTACGGATTCCG 23814 Query 79195 TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254 | | |||| | || | || ||||||||||| | ||||| || |||| | Sbjct 23813 TGTTGCTTGATGGATTGCTTCAAGGAGTCCCAATCCCACAAATCAGTAGGTGTAACACCC 23754 Query 79255 CAAAGATCATATTGTAGAATACCGTTACTAGCGTAT-GATCCTGTGTATGTTTCATAAGG 79313 || | ||||||||| || || || | || | || ||| || || || || || Sbjct 23753 CACATATCATATTGGAGTTCTCCCTT-CGAGACTGGAGAGCCTTGATAAGTGTCGTATGG 23695 Query 79314 TCC---TTCCTTTTCGGCTAATTC-ACAACTCGCCTCTAATGCTCCGTAATAAATGGTTT 79369 || ||||||| || | || || | || || || ||| || || || | Sbjct 23694 GCCAAGTTCCTTT---GCAATCTCGACGGATGAGGTC-AAGGCGGCGTGGTAGATAGTCT 23639 Query 79370 CGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG- 79427 ||||||| | | ||||| | |||| |||||| || || |||||| | ||||| Sbjct 23638 CGAAAATTTGGATGTTGAGGTGCTTG-GCTTCTGGGGAGTCGAATGGAAGACG-AAGAGC 23581 Query 79428 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 79486 || ||| || || || | ||||||||||| | | ||||||||||||||| ||| | Sbjct 23580 CAAGAAA-GCATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCGGAAATT-G 23523 Query 79487 AAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545 |||| | |||||| | ||||| ||||| || || || || || || | || || Sbjct 23522 CTCTTTCTGGCTTCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAAGTTTCTA 23463 Query 79546 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTACAA-- 79603 || | || | || || || | || || | || ||| | ||| || ||| || Sbjct 23462 ACAACAACCTGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCCCTC-ATT-CATGT 23405 Query 79604 --AC--ATGTT--CAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 79657 || ||||| ||| |||| ||| |||| ||||| || ||||||| | | | Sbjct 23404 TGACGAATGTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAG 23345 Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717 || | | ||||| ||||| | ||| | ||| || || | || | ||| | Sbjct 23344 AGTACTCCACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCTTTTGGT 23285 Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777 | ||||| ||||| || ||||| || ||||| ||||| ||| | || || || | |||| Sbjct 23284 TGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAG 23225 Query 79778 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCT- 79836 ||| | ||| | | ||| | | ||||||| || || |||| | ||| || Sbjct 23224 CTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTGCCTG 23168 Query 79837 -CTT-TCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892 ||| ||||| ||| | | | |||||||| || || ||||||| | || || Sbjct 23167 CCTTCTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCACCATAAACATCTGCCAAGCC 23110 Query 79893 AGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATA 79950 |||||||||| || ||||| | | ||| ||||| | || ||| ||||| ||||| Sbjct 23109 TGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGT--TCTTTTCAACTCGCTTCATG 23052 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || |||||||||||||| | || || ||||| | | | | || || || || Sbjct 23051 AATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTACCA 22992 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 |||||| ||||| |||||| | | || ||| | |||||| || || | ||| | Sbjct 22991 TGATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACA 22932 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | | || || || ||||| || || || || | ||||| || ||||| || || Sbjct 22931 GCAAAAGCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAA 22872 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 |||| | ||| |||| |||||| || || | |||||||| || | ||| || ||| Sbjct 22871 ACTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGCACCA 22812 Query 80191 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250 | ||||| || | ||| ||||| || || || || | || ||||| | || Sbjct 22811 GTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCA 22752 Query 80251 CATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAA 80310 || || || || || || || || || || ||||| || |||||| | || || Sbjct 22751 CAGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAG 22692 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 || || | ||| | ||| |||||| || | || || || || || ||| Sbjct 22691 CACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTA 22632 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATG 80429 || | || | |||| | || || || || ||||| ||| ||||| || | || Sbjct 22631 AAGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCG-TG 22573 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 ||| || || || |||||||| | ||| || || || | ||| | | |||| || | Sbjct 22572 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCATCGAG 22513 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 80547 | | ||| ||| ||| | ||||| || || || || | ||| ||||| ||| Sbjct 22512 ACGTAGAAGGTATGATCGTTCAAGTGTTTTGAAGCCGAAGTATTGGTAGTTGAAA--TCT 22455 Query 80548 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC--ATGG 80605 || || || | |||| | |||||||||| |||| || | | | || ||| | ||| Sbjct 22454 CGGTCATAGACAATAGCAGAGTTGAGTTCCTCCTCATGTCTCATGAC-GCATTCGAATGT 22396 Query 80606 TGATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA 80664 | | |||| ||| || ||||| | | |||||| | || || ||| | | ||||| Sbjct 22395 T--TCCTTGCTAATCATAGGAGATGGCGTGCCATTTCTTGGGTTTGTATATTGGTATAAA 22338 Query 80665 TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATT 80724 || || || | ||| |||| || |||| ||||| ||||| || || || || Sbjct 22337 TCGCGGATAACATGCGAGAATTGTTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATA 22278 Query 80725 CTGGCGGCTAAAATGGCATAATCTGGATG 80753 | || |||| |||||||||||| ||||| Sbjct 22277 CGAGCAGCTAGAATGGCATAATCGGGATG 22249 >seq2055 Length=75196 Score = 145 bits (160), Expect = 1e-29 Identities = 355/532 (67%), Gaps = 11/532 (2%) Strand=Plus/Minus Query 49653 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712 || |||||| || |||||||| ||||| || | || ||||| || || || || || Sbjct 73740 AGCCATAACACCGGCCTTTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACC 73681 Query 49713 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAttttt--tt 49769 |||| || || || |||||||| || || || |||||| || || ||||| | || Sbjct 73680 AGCCAAGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTT 73621 Query 49770 AAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTC 49829 | ||||| | | | | ||| || || || || || ||| ||||| | | Sbjct 73620 A---CCCAAAGCCATGAGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTT 73564 Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 | ||||| || | || | ||||||||| | || | |||||||| || || Sbjct 73563 GGAGTTCATGCCCAAGAGAGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTC 73504 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTT 49948 || || || || || | | | ||||| || ||| | || || ||| | ||| Sbjct 73503 AACGGCTTCGGTAATGACATCTTGAACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGAG 73445 Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 || | | |||||||||||| ||| |||||||| || | || |||||||||| Sbjct 73444 AGAAGAGAAGGCATGCGAAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGG 73385 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACC 50068 | || || ||||||| ||| || |||||||| || ||||| || ||||| || || || | Sbjct 73384 AGAAGGTAAGTCCGGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGC 73325 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG- 50127 | || |||||||| ||||| || || || || || || || | | || | ||| | Sbjct 73324 CGGAGAAGAAGATACCTTCAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGAGT 73265 Query 50128 --CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177 |||| || ||||| || |||||| ||||||||||| || | ||||| Sbjct 73264 TCTTGTCTTGGATCCATTTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 73213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718245420350560