Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1009 217 2e-51 seq2055 120 4e-22 >seq1009 Length=94825 Score = 217 bits (240), Expect = 2e-51 Identities = 1310/2071 (63%), Gaps = 61/2071 (3%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || ||||| || | || || || | ||||||||||||||||| || || || | | Sbjct 24293 GTGAATTGAATAGGTGCCGAGGCAGCCATGGTACGTAGATAGTACATTCCGGTCTTCAAA 24234 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 || | |||| || |||||||||| || | || || | ||||||| || Sbjct 24233 CCCAATTTCCAACCAGCAAAATGCATAGATGTAATCTTACCCATTG-TAGGATCCTTCAT 24175 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 |||||| ||||| || ||| ||||||||| || || || | || |||||||||| | Sbjct 24174 GTGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAAC 24115 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 || || ||| | |||||||||| || || || | ||| || || |||||| Sbjct 24114 AATTGTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAAT 24055 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 || | | || || |||||||||||||| ||||| || | || || || | ||| Sbjct 24054 ATTGGGGATGTTTTGGATGGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGA 23995 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||| | | ||| | || | || || |||||||| ||||| |||||||| Sbjct 23994 CCAGAGACCCATATCGACAAGGTCTTTGAGAAGCCATGGATTAACGACTTGGAATTCTCC 23935 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 | | || | ||| | ||| || || ||| || ||||| | | ||||| || Sbjct 23934 GGCAAGAACACGACGGGAGTAGATGTTTGAGGTGTAAGGTTCGAAACATTCATTGAAGCC 23875 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 | |||||| | || ||||| ||||| ||||| || | || || | | || Sbjct 23874 AAGAATTTGGGATGTGCTAGCAGTAGGCATGGGTGCAACGAGGAGGGAGTTACGGATTCC 23815 Query 71277 ATGT-----GATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACA 71331 ||| ||| ||||| ||| || || ||||||| ||| | ||| | ||| | Sbjct 23814 GTGTTGCTTGAT-GGATTG---CTTCAAG-GAGTCCCAATCCCACAAATCAGTAGGTGTA 23760 Query 71332 ACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTAT-GATCCTGCATATGTATC 71390 || || || | || | || ||| ||| || || Sbjct 23759 ACACCCCACATATCATATTGGAGTTCTCCCTT-CGAGACTGGAGAGCCTTGATAAGTGTC 23701 Query 71391 GTATGGTCC---TTCTTTTTCGGCTAGTTC-ACAACTCGCCTCTAATGCTCCATAATAAA 71446 |||||| || ||| ||| || | || || | || || || | | || | Sbjct 23700 GTATGGGCCAAGTTCCTTT---GCAATCTCGACGGATGAGGTC-AAGGCGGCGTGGTAGA 23645 Query 71447 TGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTT 71505 | || |||||||| | | ||||| | |||| ||||| ||| || |||||| | Sbjct 23644 TAGTCTCGAAAATTTGGATGTTGAGGTGCTTG-GCTTCTGGGGAGTCGAATGGAAGACG- 23587 Query 71506 AAGAG--AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 ||||| || ||| || || || | |||||||| || | | |||||||||| |||| Sbjct 23586 AAGAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCGGA 23528 Query 71564 TATTAGAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 ||| | |||| | |||||| | ||||| ||||| || || || || || || | Sbjct 23527 AATT-GCTCTTTCTGGCTTCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAAG 23469 Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCT 71679 ||||| || | || | || || || | || || | || ||| | || | ||| Sbjct 23468 TTTCTAACAACAACCTGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCCCTCATTC 23409 Query 71680 AT-TACAAACACGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 71736 || | | | ||| ||| || | ||| |||| ||||| || ||||||| | Sbjct 23408 ATGTTGACGAATGTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGGT 23349 Query 71737 TCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 71796 | | || | | ||||| ||||| | || | || || || | || | | Sbjct 23348 GCAGAGTACTCCACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCTTT 23289 Query 71797 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATC 71856 || || ||||| ||||| || ||||| || ||||| || || ||| | || || || | Sbjct 23288 TGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTT 23229 Query 71857 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTT 71916 |||| ||| | ||| | | ||| | | ||||||| || | ||||| | ||| Sbjct 23228 TGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTG 23172 Query 71917 TCT--CTT-TCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTA 71971 || ||| ||||| ||| | | | |||||||| || || || ||| | | Sbjct 23171 CCTGCCTTCTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCACCATAAACATCTGCCA 23114 Query 71972 ATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTT 72029 | || |||||||| || || ||||| | | ||| ||||| | || ||| ||||| || Sbjct 23113 AGCCTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGT--TCTTTTCAACTCGCTT 23056 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089 ||| || |||||||||||||| | || || ||||| | | | | || || || Sbjct 23055 CATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTT 22996 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || |||||| ||||| |||||| | | || ||| | |||||| || || | ||| Sbjct 22995 ACCATGATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTA 22936 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 | || | | | || || || ||||| || || || || | ||||| || ||||| || Sbjct 22935 AACAGCAAAAGCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTT 22876 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 |||||| | ||| |||| |||||| || || |||||||| || | ||| || Sbjct 22875 GAAAACTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGC 22816 Query 72270 TCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 ||| | ||||| || || ||| ||||| || || || || | || ||||| | Sbjct 22815 ACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCAT 22756 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || || || || || || || || || || |||||||| ||| |||||| | || Sbjct 22755 GGCACAGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAG 22696 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 || || || | ||| | ||| |||||| || | || || || || || Sbjct 22695 GAAGCACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATG 22636 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATT 72508 ||||| | || | |||| | || || || || ||||| ||| ||||| || Sbjct 22635 TGTAAAGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACC 22576 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 | || || || || || |||||||| | ||| || || || | ||| | | |||| || Sbjct 22575 G-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCAT 22517 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAA 72626 | | | ||| ||| ||| | ||||| || || || || | ||| ||||| Sbjct 22516 CGAGACGTAGAAGGTATGATCGTTCAAGTGTTTTGAAGCCGAAGTATTGGTAGTTGAAA- 22458 Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCAT 72686 ||||| || || | |||| | || ||||||| |||| || | | | || || | Sbjct 22457 -TCTCGGTCATAGACAATAGCAGAGTTGAGTTCCTCCTCATGTCTCATGACGCATTCGAA 22399 Query 72687 GGTGATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATA 72745 || | |||| ||| || ||||| | | |||||| | || || ||| | | ||| Sbjct 22398 TGT-TTCCTTGCTAATCATAGGAGATGGCGTGCCATTTCTTGGGTTTGTATATTGGTATA 22340 Query 72746 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTA 72805 |||| || || | ||| |||| || |||| ||||| ||||| || || || | Sbjct 22339 AATCGCGGATAACATGCGAGAATTGTTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAA 22280 Query 72806 TTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 | | || ||||||||||||||||| ||||| Sbjct 22279 TACGAGCAGCTAGAATGGCATAATCGGGATG 22249 >seq2055 Length=75196 Score = 120 bits (132), Expect = 4e-22 Identities = 352/534 (66%), Gaps = 15/534 (3%) Strand=Plus/Minus Query 41758 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCC 41817 || |||||| || |||||||| ||||| || | || ||||| || || ||||| || Sbjct 73740 AGCCATAACACCGGCCTTTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACC 73681 Query 41818 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAttttt--tt 41874 |||| || || || |||||||| || || || |||||| || || ||||| | || Sbjct 73680 AGCCAAGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTT 73621 Query 41875 AAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTC 41934 | ||||| | | | | ||| || | ||| || || ||| ||||| | | Sbjct 73620 A---CCCAAAGCCATGAGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTT 73564 Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994 | ||||| || | || | ||||||||| | || | |||||||| || || Sbjct 73563 GGAGTTCATGCCCAAGAGAGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTC 73504 Query 41995 GACCGCGTCTGTTATAATAGATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATG 42051 || || || || || | | |||| || | || ||| | || || | | | ||| Sbjct 73503 AACGGCTTCGGTAATGACA--TCTTGAACGGCTTGCTTGGATGGGCGG-TGCTTGAGATG 73447 Query 42052 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTT 42111 || | | |||||||||||| ||| ||||||||||| | || | |||||| Sbjct 73446 AGAGAAGAGAAGGCATGCGAAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTT 73387 Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171 ||| || || ||||||| ||| || |||||||| || ||||| || || || || || || Sbjct 73386 GGAGAAGGTAAGTCCGGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGA 73327 Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG- 42230 || || |||||||| ||||| || || || || || | || | | || | || Sbjct 73326 GCCGGAGAAGAAGATACCTTCAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGA 73267 Query 42231 --CACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 |||| || ||||| || |||||| ||||||||||| || | ||||| Sbjct 73266 GTTCTTGTCTTGGATCCATTTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 73213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671117354419040