Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2210 93.3 3e-14 >seq2210 Length=20483 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969 |||||| || | ||||| || ||||||||||| ||||| || | || |||| Sbjct 18219 CACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCG--AAAGGGTTCTGCCATCC 18162 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| || ||||||||||| ||||| ||||| || || | || | || || ||||| Sbjct 18161 TCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTATCC 18102 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || || || || ||| |||||||| || || || || | ||||| || Sbjct 18101 TGGATCTTCGACTTAACATTATCAATAGTATCTGACGATTCTACTTCCAATGTAATGGTC 18042 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || ||||| ||||| |||||||| Sbjct 18041 TTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354766340689392