Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2210 113 1e-19 >seq2210 Length=20483 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104368 TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 104427 ||| || |||||||| || || || || ||||| || || || | || ||||| ||||| Sbjct 18201 TTCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAA 18142 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 || | | ||||||||||| || || || || |||||||| ||||| | || ||||| Sbjct 18141 GATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATT 18082 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||||| | |||||| || | |||||| ||||| ||||| | || || || Sbjct 18081 ATCAATAGTATCTGACGATTCTACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGAC 18022 Query 104548 AAATATCTGCAT 104559 ||| || ||||| Sbjct 18021 AAAGATTTGCAT 18010 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | |||||| || ||||| || || || || || || || ||||| | || || Sbjct 17994 AAGGACCAAATGTAAGGTCGATTCCTTTTGGATGTTGTAATCCGAAAGAGTGCGGCCATC 17935 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | || || |||||||| || || | ||||||||||| || || || || ||||| Sbjct 17934 CTCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTATC 17875 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| | || ||||| || | ||| || | || ||||| | || || || Sbjct 17874 TTGGATCTTGGACTTCACATTGTCGATGGTGTCCGATGACTCAACCTCCAAAGTGATTGT 17815 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || || || ||||| Sbjct 17814 CTTCCCAGTGAGGGTCTTGACGAAGATTTGCAT 17782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151359985031632