Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2550 86.0 7e-12 >seq2550 Length=61157 Score = 86.0 bits (94), Expect = 7e-12 Identities = 163/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 7007 CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT--ATATCAGATGG 7064 |||||||||| || | |||||| || || ||| | | | | || ||||| | Sbjct 5127 CATAAAATTGCGCAAACATATGACAAGGTGGCAAAGC--CATCAACTTAATATCTGCCAC 5184 Query 7065 ATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAAT 7124 |||||| ||| ||| | ||| | |||||| ||||| | || ||||| | ||| Sbjct 5185 ATTCCACGCACTCAAAATAATCCTTCTATCCCACGGATTGTTCTTCAATTTCCACACAAT 5244 Query 7125 TATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGC 7184 | |||||| | |||||| ||| ||||| || | || || || ||||| Sbjct 5245 CTCCGCCAGTTGATCAACACCCTGTCCTGTATAATCCGTCTCTGCATCGATGTATTTAGC 5304 Query 7185 TCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGA 7242 || ||||||| ||||||||| ||||| | |||||||||||||||||| | |||||| Sbjct 5305 GCCGAAATGTCGCCATTGAAATCCATACACAGGACCTAAATCACCTTCAGCCCGATGA 5362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595852604366400