Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2089 96.9 3e-15 seq2210 86.0 6e-12 >seq2089 Length=24093 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || ||||||||||| | ||| || |||||||| | ||| || ||| | ||| | | Sbjct 11813 CGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCA 11754 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || |||||| | ||||| |||| || || || || || || || || ||| Sbjct 11753 TCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTG 11694 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | ||| ||||| | || || || | |||||| Sbjct 11693 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATG 11634 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| || || || || || || |||||||||||| Sbjct 11633 GTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 11598 >seq2210 Length=20483 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| || ||||||||| | || ||||| | || || |||||| Sbjct 18219 CACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCCATCCTC 18160 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| ||||| ||||||| |||| ||| ||||| || ||||| || || || || | Sbjct 18159 CAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTATCCTG 18100 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || | ||| || | | ||| || | || || || | || ||||| || Sbjct 18099 GATCTTCGACTTAACATTATCAATAGTATCTGACGATTCTACTTCCAATGTAATGGTCTT 18040 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| | || || |||||||| ||||| Sbjct 18039 TCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || || || ||||||||||| | ||| ||||| | |||| | ||||||| Sbjct 17990 ACCAAATGTAAGGTCGATTCCTTTTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCC 17931 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || || ||||||| | | ||| ||||| || || ||||| || || || | Sbjct 17930 AACTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTATCTTGG 17871 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| || | ||| ||||| | || || || | ||||| || || Sbjct 17870 ATCTTGGACTTCACATTGTCGATGGTGTCCGATGACTCAACCTCCAAAGTGATTGTCTTC 17811 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||| ||||| Sbjct 17810 CCAGTGAGGGTCTTGACGAAGATTTGCAT 17782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448276608121440