Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq151 113 7e-21 seq2132 104 4e-18 >seq151 Length=10676 Score = 113 bits (124), Expect = 7e-21 Identities = 87/101 (86%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||||| |||| | | |||| ||||||||||| ||||||||||||||||| Sbjct 7591 GCTAAGCGTCATCGTAAGAT-TTTGAGAGACAACATCCAAGGTATCACCAAGCCAGCTAT 7649 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 | | ||||| |||||||||||||| ||||||||| | |||| Sbjct 7650 CAGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 7690 Score = 98.7 bits (108), Expect = 2e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||||||||||| |||||| | || || | ||||| Sbjct 7805 TGATCTACGAAGAGACCCGTGGTGTTTTGAAGACTTTCCTCGAAGGTGTCATTCGTGATG 7864 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | | ||| |||||||| || || || ||||| || || ||| | || | ||||| | Sbjct 7865 CCGTTACCTACACCGAGCATGCCAAGCGCAAGACCGTTACTTCCCTCGACGTTGTCTACG 7924 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||||| | |||||||||| | |||||||| || ||||| Sbjct 7925 CATTGAAGAGACAAGGCCGTACCCTCTATGGTTTCGGTGGTTAA 7968 >seq2132 Length=22760 Score = 104 bits (114), Expect = 4e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| ||| | | |||| ||||||||||| || || ||||||||||| Sbjct 6844 GCCAAGCGTCATCGCAAGATTT-TGAGAGACAACATCCAAGGCATAACTAAGCCAGCTAT 6786 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | | ||||| |||||||||||||| ||||||||| |||| Sbjct 6785 CAGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 6747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072819144572