Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1009 246 4e-60 seq2055 149 8e-31 >seq1009 Length=94825 Score = 246 bits (272), Expect = 4e-60 Identities = 1309/2066 (63%), Gaps = 51/2066 (2%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||||||| || || || || | | |||||||||||||||||||| || || | | Sbjct 24293 GTGAATTGAATAGGTGCCGAGGCAGCCATGGTACGTAGATAGTACATTCCGGTCTTCAAA 24234 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| || |||||||||| || | || | ||||| || Sbjct 24233 CCCAATTTCCAACCAGCAAAATGCATAGATGTAATCTTACCCATTGTAGGATCCTTCATG 24174 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || ||||| |||||| ||||||||| || || || | || |||||||||| | Sbjct 24173 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 24114 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || ||| | |||||||||| || || || | ||| || || |||||| Sbjct 24113 ATTGTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATA 24054 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | | || || |||||||||||||| || || || | ||||| || | ||| | Sbjct 24053 TTGGGGATGTTTTGGATGGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGAC 23994 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || | | ||| | || | || || |||||||| ||||| |||||||| Sbjct 23993 CAGAGACCCATATCGACAAGGTCTTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 23934 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | | || | || | ||| || || ||| || ||||| | | ||||| || Sbjct 23933 GCAAGAACACGACGGGAGTAGATGTTTGAGGTGTAAGGTTCGAAACATTCATTGAAGCCA 23874 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 | |||||| | || ||||| ||||| ||||| || | | || | | ||| Sbjct 23873 AGAATTTGGGATGTGCTAGCAGTAGGCATGGGTGCAACGAGGAGGGAGTTACGGATTCCG 23814 Query 62472 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 62531 | | |||| | || | | ||||||| ||| | ||| | ||| ||| Sbjct 23813 TGTTGCTTGATGGATTGCTTCAAGGAGTCCCAATCCCACAAATCAGTAGGTGTAACACCC 23754 Query 62532 NNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCGTA 62587 ||| || || || ||||| | | ||| ||| || ||||| Sbjct 23753 CACATATCATATTGGAGTTCTCCCTTCGAGACTGGAG----AGCCTTGATAAGTGTCGTA 23698 Query 62588 TGGTCC---TTCCTTCTCAG-CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 62643 ||| || |||||| || || | || | || || || ||| || || | Sbjct 23697 TGGGCCAAGTTCCTTTGCAATCTCG---ACGGATGAGGTC-AAGGCGGCGTGGTAGATAG 23642 Query 62644 TTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG 62702 | ||||| || | | || || | |||| ||||| || || |||||| | ||| Sbjct 23641 TCTCGAAAATTTGGATGTTGAGGTGCTTG-GCTTCTGGGGAGTCGAATGGAAGACG-AAG 23584 Query 62703 AG--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62760 || || ||| || || || | ||||||||||| | | ||||||||||||||| || Sbjct 23583 AGCCAAGAAA-GCATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCGGAAAT 23525 Query 62761 TAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62819 | | |||| | |||||| | ||||| ||||| || || || || || || | ||| Sbjct 23524 T-GCTCTTTCTGGCTTCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAAGTTT 23466 Query 62820 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT- 62875 || |||| || | || || || | || || | || ||| | || | ||| || Sbjct 23465 CTAACAACAACCTGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCCCTCATTCATG 23406 Query 62876 TACAAACATGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933 | | ||||| ||| || | ||| |||| ||||| || ||||||| | | Sbjct 23405 TTGACGAATGTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCA 23346 Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 | || | | || || ||||| | || | ||||| || | || | ||| Sbjct 23345 GAGTACTCCACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCTTTTGG 23286 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 || ||||| ||||| || ||||| || ||||| ||||| ||| | || || || | ||| Sbjct 23285 TTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGA 23226 Query 63054 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT 63113 | ||| | ||| | | ||| | | ||||||| || || ||| | | | || Sbjct 23225 GCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTGCCT 23169 Query 63114 --CTT-TCGTATAGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63168 ||| ||||| ||| | | | |||||||| || || |||||| |||| | Sbjct 23168 GCCTTCTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCACCATAAACATCTGCCAAGC 23111 Query 63169 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63228 | |||||||| | || ||||| | | ||| ||||||| | | ||||| ||||| | Sbjct 23110 CTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATGA 23051 Query 63229 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288 | |||||||||||||| | || || ||||| | | | | ||| || || || Sbjct 23050 ATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTACCAT 22991 Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348 |||||| ||||| |||||| | | || ||| | |||||| || || | ||| | | Sbjct 22990 GATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACAG 22931 Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408 | | | | ||||| || ||||| || || || || | ||||| || ||||| || ||| Sbjct 22930 CAAAAGCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAAA 22871 Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468 ||| | ||| |||| ||||||||| || | ||||||||||| | ||| || ||| Sbjct 22870 CTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGCACCAG 22811 Query 63469 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528 | ||||| || | ||| ||||| || || || || | || ||||| | || | Sbjct 22810 TAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCAC 22751 Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588 | || || ||||| || ||||| || || ||||| || |||||| | || || | Sbjct 22750 AGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAGC 22691 Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 | || | ||| | ||| |||||| || | || || || || || |||| Sbjct 22690 ACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAA 22631 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63707 | | || | || | | || || || || ||||| || ||||| || | ||| Sbjct 22630 AGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCG-TGA 22572 Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63767 || || || || |||||||| | ||| || || || | ||| | | |||| | | Sbjct 22571 ATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCATCGAGA 22512 Query 63768 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTC 63825 | | ||| ||| ||| | ||||| || || || || | ||| ||||| |||| Sbjct 22511 CGTAGAAGGTATGATCGTTCAAGTGTTTTGAAGCCGAAGTATTGGTAGTTGAAA--TCTC 22454 Query 63826 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGA 63885 | || || | |||| | |||||||||| |||| || | | | || || | || Sbjct 22453 GGTCATAGACAATAGCAGAGTTGAGTTCCTCCTCATGTCTCATGACGCATTCGAATGT-T 22395 Query 63886 TACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCC 63944 | |||| ||| || ||||| | | |||||| | || || ||| | | ||||||| Sbjct 22394 TCCTTGCTAATCATAGGAGATGGCGTGCCATTTCTTGGGTTTGTATATTGGTATAAATCG 22335 Query 63945 TCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTG 64004 || || | ||| |||| || |||| ||||| ||||| || || || || | Sbjct 22334 CGGATAACATGCGAGAATTGTTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGA 22275 Query 64005 GCGGCTAGAATGGCATAATCCGGATG 64030 || ||||||||||||||||| ||||| Sbjct 22274 GCAGCTAGAATGGCATAATCGGGATG 22249 >seq2055 Length=75196 Score = 149 bits (164), Expect = 8e-31 Identities = 356/532 (67%), Gaps = 11/532 (2%) Strand=Plus/Minus Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056 || |||||| || |||||||| ||||| || | || ||||| || || || || || Sbjct 73740 AGCCATAACACCGGCCTTTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACC 73681 Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAttttt--tt 33113 |||| || || || |||||||| || || || |||||| || || ||||| | || Sbjct 73680 AGCCAAGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTT 73621 Query 33114 AAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTC 33173 | ||||| | | | | ||| || ||||| || || ||| ||||| | | Sbjct 73620 A---CCCAAAGCCATGAGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTT 73564 Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 | ||||| || | || | ||||||||| | || | |||||||| || || Sbjct 73563 GGAGTTCATGCCCAAGAGAGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTC 73504 Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTT 33292 || || || || || | | | ||||| || ||| | || || ||| | ||| Sbjct 73503 AACGGCTTCGGTAATGACATCTTGAACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGAG 73445 Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 || | | |||||||||||| ||| |||||||| || | || |||||||||| Sbjct 73444 AGAAGAGAAGGCATGCGAAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGG 73385 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33412 | || || ||||||| ||| || |||||||| || ||||| || ||||| ||||| || | Sbjct 73384 AGAAGGTAAGTCCGGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGC 73325 Query 33413 CAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG- 33471 | || |||||||| ||||| || ||||| || || | || | | || | || | Sbjct 73324 CGGAGAAGAAGATACCTTCAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGAGT 73265 Query 33472 --CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521 |||| || ||||| || |||||| ||||||||||| || | ||||| Sbjct 73264 TCTTGTCTTGGATCCATTTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 73213 Score = 82.4 bits (90), Expect = 1e-10 Identities = 220/334 (66%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCA--TTACTATCTTTAACATAAGTATCGA 33583 || || || ||||| || || || | |||| | || || | || | ||| || |||| Sbjct 73155 GTCTCAATAGCATTGAACAGGTATGTCTTTTGAGCTTGCT--CCTTGATATATGTGTCGA 73098 Query 33584 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 33643 | | |||| || |||| || || ||||| || || || || || ||||| || | Sbjct 73097 TGAGAAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAAAAGC 73038 Query 33644 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTA 33703 ||| ||||| | || || ||||| | |||| ||| |||| || || || || | Sbjct 73037 ATCGTGCCTCTGGGATTTGAACTTCGCCGCTGAATCTTTCAACCAAGTTCTCGTTGACAA 72978 Query 33704 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33763 ||||||| ||||| || || || | ||||| || || || ||||| Sbjct 72977 TTCCGTCGGATGCTGCGAAGAATGCAAGAACATGGGAGATGAAGTAACGCTCGTCGTCAT 72918 Query 33764 TTAGTTTATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAA 33820 | ||| | || ||| || | | ||| || || | ||| | ||||| | ||||| | Sbjct 72917 TGAGTCTGTTGCTCCAGTCGTGAAGATCCTTTGACAAATCGATCTCTTCTGCGGTCCAGA 72858 Query 33821 ATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 | |||||||||||||| || ||||| | |||||| Sbjct 72857 AAGATGCCTCTGCCTTCTTGTACATCTGCCAGAT 72824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622926923068640