Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1009 295 2e-74 seq2306 86.0 2e-11 >seq1009 Length=94825 Score = 295 bits (326), Expect = 2e-74 Identities = 1146/1766 (65%), Gaps = 40/1766 (2%) Strand=Plus/Plus Query 363414 ATCCTACCTATCT-CGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGC 363472 ||| ||||| ||| ||| || |||| | ||| ||||| || || || ||| | |||| Sbjct 22497 ATCATACCT-TCTACGTCTCGATGGCAAGGTTGCAGAACGTCCACAACAAATGATCATGC 22555 Query 363473 GTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTC 363532 ||||||| ||||||| || | ||| | || || || ||||||||||| ||| Sbjct 22556 GTGTTGCCGTTGGTATTCACGGTGATGATATCGAAAGTGCTATCGAAACATATAA-CTTG 22614 Query 363533 TAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAA 363590 | || | | ||| || || || ||| | |||||| | | | ||| || |||| | Sbjct 22615 -ATGTCGAACAAGTACTTTACACATGCCTCCCCAACACTCTTCTCTGCGGGTACTCCACA 22673 Query 363591 TCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTT 363650 |||| | || || ||||| || | | |||||||| ||| || || ||||| | Sbjct 22674 AGCACAACTTTCATCGTGCTTCCTCATCGACATGAAGGAGGATAGTATTGATGGTATTTA 22733 Query 363651 TGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGAT 363710 ||||| | |||| ||||| | || || |||||||| || || |||||| | || Sbjct 22734 CGACACTTTGAAGATCTGTGCCATGATCTCAAAGAATGCTGGTGGTATTGGTCTCAACAT 22793 Query 363711 CCACAATGTTCGTGC-ACAGAA-CAGTTACATTCGC-GGCACAGGGGGATACTCGAATGG 363767 |||| | ||||| || | || ||||| ||| || || ||| |||| || || Sbjct 22794 TCACAGAATCCGTGCTACTGGTGCA--TACAT-CGCTGGTACCAATGGAAACTCTAACGG 22850 Query 363768 GCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGG 363827 | ||||| ||||| || || || |||| ||||| || || || ||||| ||||| Sbjct 22851 TATTGTTCCTATGCTCCGAGTTTTCAACAACACTGCCAGATATGTTGACCAAGGTGGTAA 22910 Query 363828 AAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTT 363887 ||||| || || |||||| | || || ||||| ||||| ||| |||| ||||| Sbjct 22911 CAAGCGTCCTGGTGCTTTTGCTGTTTACCTTGAGCCATGGCATGCGGATGTTTTCGAGTT 22970 Query 363888 TCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGC 363947 ||||| || || || || || || || ||| | |||||||| ||||| ||||| || Sbjct 22971 CCTTGATCTACGTAAGAATCATGGTAAGGAAGAAGTTCGTGCACGCGATCTCTTCTACGC 23030 Query 363948 ACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG--GCAGGTAAGAATTGGTCACTC 364005 | ||| || |||| | || |||||||| || || | | | | |||| || | ||| Sbjct 23031 CTTGTGGATTCCTGATCTATTCATGAAGCGAGTTGAAAAGAACGGA-GAAT-GGACTCTC 23088 Query 364006 TTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTA 364065 | ||||| ||||||||||||| | | ||||| | ||||| || | | ||||| Sbjct 23089 ATGTGCCCCAACGAATGTCCAGGCTTGGCAGATGTTTATGGTGAGGAGTTCGAGGCTCTC 23148 Query 364066 TACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGG 364125 ||||| || || || || |||| ||| ||||| || || || ||||| ||| Sbjct 23149 TACGAGGGTTACGAGAAGGCAGGCAAGGGTCGCAAGACTATCAAGGCTCAAAAGCTTTGG 23208 Query 364126 TTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCG 364185 | | || | || | || | ||||| |||| || | ||| | ||||||||| | Sbjct 23209 TACTCTATTCTCGAAGCTCAAACCGAGACCGGAAATCCTTTCATGCTTTACAAAGATGCA 23268 Query 364186 TGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTAC 364244 |||||| ||| |||||| || |||| ||||| |||| | || |||| | || || Sbjct 23269 TGCAACAAGAAGAGCAACCAAAAGAACCTCGGTACTATTC-GAAGCTCCAACTTGTGCAC 23327 Query 364245 CGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 || || | || ||| | || || || ||| ||| |||||| | || || ||||| Sbjct 23328 AGAAATCGTGGAGTACTCTGCACCAGATGAGGTTGCTTGCTGTAACTTGGCTTCTATCGC 23387 Query 364305 GCTTCCGGCGTTTG------TAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGT 364358 | || | || | | || || || |||| |||| ||| | ||| | || || Sbjct 23388 TTTGCCAACATTCGTCAACATGAATGAGGGAACTTATGACTTCCAAAAGCTTCACGAGGT 23447 Query 364359 AACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCC 364418 | || | | | || | ||||| | || |||| ||||| |||||| | | Sbjct 23448 TGTTCAGGTTGTTGTTAGAAACTTGAACAAGATCATTGACATCAATTACTATCCAGTCGC 23507 Query 364419 TGAAGCC-GAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCG 364477 |||||| || | | ||| | || ||| | || || | | | ||||| || || || | Sbjct 23508 AGAAGCCAGAAAGAGC-AATTTCCGACATAGACCTATCGCTGTCGGTGTTCAAGGTCTTG 23566 Query 364478 CTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATA 364537 |||| | ||| || || | |||| || || || || || || || | Sbjct 23567 CTGATGCTTTCTTGGCTCTTCGTCTTCCATTCGACTCCCCAGAAGCCAAGCACCTCAACA 23626 Query 364538 AGGAGATCTTTGAAACAATGTATTTTGCCGCAATGA-CTGCTTCGT-GTGATTTGGCAAA 364595 | || || || || || || ||||| ||| || | ||| | |||| ||||| Sbjct 23627 TCCAAATTTTCGAGACTATCTACCACGCCGCCTTGACCTCATCCGTCGAGATT--GCAAA 23684 Query 364596 -AACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGT 364654 | | || | ||| |||||| | || || || | ||| ||||| || |||| | Sbjct 23685 GGAACTTGGCCCA-TACGACACTTATCAAGGCTCTCCAGTCTCGAAGGGAGAACTCCAAT 23743 Query 364655 TTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAA-- 364712 |||| | ||| ||| || || ||| ||| | |||| || | | ||| Sbjct 23744 ATGATATGTGGGGTGTTACACCTACTGATTTGTGGGATTGGG--ACTCCTTGAAGCAATC 23801 Query 364713 CGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTAC 364772 | | ||| | || || | || ||||||||| | || |||||||| || ||| || Sbjct 23802 CATCAAGCAACACGGAATCCGTAACTCCCTCCTCGTTGCACCCATGCCTACTGCTAGCAC 23861 Query 364773 TGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA-AGCAATC-TTTATTCA 364830 | || || || || ||| || || |||||||| ||||| ||| | | || || Sbjct 23862 ATCCCAAATTCTTGGCTTCAATGAATGTTTCGAACC--TTACACCTCAAACATCTACTCC 23919 Query 364831 CGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCC 364890 || || |||||| |||||||||| | || |||||| | || |||| || ||| | Sbjct 23920 CGTCGTGTTCTTGCCGGAGAATTCCAAGTCGTTAATCCATGGCTTCTCAAAGACCTTGTC 23979 Query 364891 GACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTG 364950 || || || ||| ||||| |||||||||| |||||| || | | ||| || | Sbjct 23980 GATATGGGTCTCTGGTCTGACAACATGAAGAACCGTATCATTGCTGATGGTGGATCCATC 24039 Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 || ||||| || |||||| || | ||| || | ||||| ||||| |||||||| Sbjct 24040 CAAAACATCCCCAATATTCCAGCTGACATCAAGGCTCTCTACAAGACCGTTTGGGAAATC 24099 Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 || ||||| | || | ||||| || ||||| ||||| |||||| ||| || Sbjct 24100 TCTCAACGAACAATTGTTCAAATGGCTGCTGATCGTGGTGCATTTATCGATCAATCTCAA 24159 Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || | ||| | ||||| | || || | ||| ||||||| |||||||| Sbjct 24160 TCAATGAACATTCACATGAAGGATCCTACAATGGGTAAGATTACATCTATGCATTTTGCT 24219 Query 365131 GGGTGGAAATCCGGTCTTAAGACAGG 365156 || ||||||| ||| | ||||| || Sbjct 24220 GGTTGGAAATTGGGTTTGAAGACCGG 24245 >seq2306 Length=17745 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 65871 GTTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACG 65930 |||||| | || || ||||| || ||| ||| ||| || || ||||||| ||| Sbjct 13371 GTTACGGACAGTACCATCATACTTAGCCATGACATCCTCAAGAGCTTTGACAAGACGACG 13312 Query 65931 CTGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGA 65990 || ||||||||| | | ||| || || || |||||||||| | ||||||||| || | Sbjct 13311 TTGAATGTAACCAGTTTCTGCGGTCTTAACTGCGGTATCAATCAAACCTTCACGACCAGC 13252 Query 65991 CATTGCAGAAAAGAAAAACTCAGTCGG 66017 |||||| ||||||||||| || || Sbjct 13251 CATTGCGTGGAAGAAAAACTCTGTTGG 13225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303310115236328