Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05]
2,604 sequences; 40,732,201 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2590 134 9e-27
seq2210 111 1e-19
>seq2590
Length=12849
Score = 134 bits (148), Expect = 9e-27
Identities = 88/96 (92%), Gaps = 6/96 (6%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 9264 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 9205
Query 25957 TAATCCTTTC-ATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||| |||||||||||||||||||||||||
Sbjct 9204 TAATCCATTCAATGCGCGTCACTAATTAGATGACGA 9169
>seq2210
Length=20483
Score = 111 bits (122), Expect = 1e-19
Identities = 168/238 (71%), Gaps = 1/238 (0%)
Strand=Plus/Minus
Query 38081 CCAATCATT-ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATAT 38139
||| | ||| |||||| | | ||| | |||||| || | ||||| |||||||||||||
Sbjct 18247 CCATTTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATAT 18188
Query 38140 TGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTT 38199
||||||| || | | | || || || || ||||| ||||| || | |||||||
Sbjct 18187 TGTAATCCGAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTT 18128
Query 38200 GATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTC 38259
|||| | || | ||| || || ||| || || ||| ||||| | | |||||||
Sbjct 18127 GATCAGGTGGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTG 18068
Query 38260 CACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||| ||||| |||||||| || || || |||||||| || || || || |||||
Sbjct 18067 ACGATTCTACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334936570031924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |