Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2590 134 9e-27 seq2210 111 1e-19 >seq2590 Length=12849 Score = 134 bits (148), Expect = 9e-27 Identities = 88/96 (92%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 9264 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 9205 Query 25957 TAATCCTTTC-ATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||| ||||||||||||||||||||||||| Sbjct 9204 TAATCCATTCAATGCGCGTCACTAATTAGATGACGA 9169 >seq2210 Length=20483 Score = 111 bits (122), Expect = 1e-19 Identities = 168/238 (71%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 38081 CCAATCATT-ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATAT 38139 ||| | ||| |||||| | | ||| | |||||| || | ||||| ||||||||||||| Sbjct 18247 CCATTTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATAT 18188 Query 38140 TGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTT 38199 ||||||| || | | | || || || || ||||| ||||| || | ||||||| Sbjct 18187 TGTAATCCGAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTT 18128 Query 38200 GATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTC 38259 |||| | || | ||| || || ||| || || ||| ||||| | | ||||||| Sbjct 18127 GATCAGGTGGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTG 18068 Query 38260 CACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||||| |||||||| || || || |||||||| || || || || ||||| Sbjct 18067 ACGATTCTACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334936570031924