Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1009 253 3e-62 seq2055 125 9e-24 >seq1009 Length=94825 Score = 253 bits (280), Expect = 3e-62 Identities = 1313/2068 (63%), Gaps = 55/2068 (3%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||| || || || || | | |||||||||||||||||||| || || | | Sbjct 24293 GTGAATTGAATAGGTGCCGAGGCAGCCATGGTACGTAGATAGTACATTCCGGTCTTCAAA 24234 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| || |||||||||| || | || | ||||| || Sbjct 24233 CCCAATTTCCAACCAGCAAAATGCATAGATGTAATCTTACCCATTGTAGGATCCTTCATG 24174 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || ||||| |||||| ||||||||| || || || | || |||||||||| | | Sbjct 24173 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 24114 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || || ||| | |||||||||| || || || | ||| || || |||||| Sbjct 24113 ATTGTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATA 24054 Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | | || || |||||||||||||| || || || | ||||| || | ||| | Sbjct 24053 TTGGGGATGTTTTGGATGGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGAC 23994 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 || | | ||| | || | || || |||||||| ||||| |||||||| Sbjct 23993 CAGAGACCCATATCGACAAGGTCTTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 23934 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266 | | || | || | ||| || || ||| || ||||| | | | ||||| || Sbjct 23933 GCAAGAACACGACGGGAGTAGATGTTTGAGGTGTAAGGTTCGAAACATTCATTGAAGCCA 23874 Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326 | |||||| | || ||||| ||||| ||||| || | | || | | ||| Sbjct 23873 AGAATTTGGGATGTGCTAGCAGTAGGCATGGGTGCAACGAGGAGGGAGTTACGGATTCCG 23814 Query 62327 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 62386 | | |||| | || | | ||||||| ||| | ||| | ||| ||| Sbjct 23813 TGTTGCTTGATGGATTGCTTCAAGGAGTCCCAATCCCACAAATCAGTAGGTGTAACACCC 23754 Query 62387 NNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCGTA 62442 ||| || || || ||||| | | ||| ||| || ||||| Sbjct 23753 CACATATCATATTGGAGTTCTCCCTTCGAGACTGGAG----AGCCTTGATAAGTGTCGTA 23698 Query 62443 TGGTCC---TTCCTTCTCAG-CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 62498 ||| || |||||| || || | || | || || || ||| || || | Sbjct 23697 TGGGCCAAGTTCCTTTGCAATCTCG---ACGGATGAGGTC-AAGGCGGCGTGGTAGATAG 23642 Query 62499 TTTCGAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTATCAAATGGATAATTTAAG 62557 | ||||| || | | || || | |||| ||||| || || |||||| | ||| Sbjct 23641 TCTCGAAAATTTGGATGTTGAGGTGCTTG-GCTTCTGGGGAGTCGAATGGAAGACG-AAG 23584 Query 62558 AG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 || || ||| || || || | ||||||||||| | | ||||||||||||||| || Sbjct 23583 AGCCAAGAAA-GCATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCGGAAAT 23525 Query 62616 TAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62674 | | |||| | |||||| | ||||| ||||| || || || || || || | ||| Sbjct 23524 T-GCTCTTTCTGGCTTCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAAGTTT 23466 Query 62675 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT- 62730 || |||| || | || || || | || || | || ||| | || | ||| || Sbjct 23465 CTAACAACAACCTGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCCCTCATTCATG 23406 Query 62731 TACAAACATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 | | ||||| ||| || | ||| |||| ||||| || ||||||| | | Sbjct 23405 TTGACGAATGTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCA 23346 Query 62789 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 62848 | || | | || || ||||| | || | || || || | || | ||| Sbjct 23345 GAGTACTCCACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCTTTTGG 23286 Query 62849 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 || ||||| ||||| || ||||| || ||||| ||||| ||| | || || || | ||| Sbjct 23285 TTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGA 23226 Query 62909 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT 62968 | ||| | ||| | | ||| | | ||||||| || || ||| | ||| || Sbjct 23225 GCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTGCCT 23169 Query 62969 --CTT-TCGTATAGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTC 63023 ||| ||||| ||| | | | |||||||| || || |||||| ||| | Sbjct 23168 GCCTTCTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCACCATAAACATCTGCCAAGC 23111 Query 63024 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63083 | |||||||| | || ||||| | | ||| ||||||| | | ||||| ||||| | Sbjct 23110 CTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATGA 23051 Query 63084 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63143 | |||||||||||||| | || || ||||| | | | | ||| || || || Sbjct 23050 ATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTACCAT 22991 Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 |||||| ||||| |||||| | | || ||| | |||||| || || | ||| | | Sbjct 22990 GATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACAG 22931 Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | | | | ||||| || ||||| || || || || | ||||| || ||||| || ||| Sbjct 22930 CAAAAGCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAAA 22871 Query 63264 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCAC 63323 ||| | ||| |||| |||||| || || | |||||||| || | ||| || ||| Sbjct 22870 CTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGCACCAG 22811 Query 63324 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63383 | ||||| || | ||| ||||| || || || || | || ||||| | || | Sbjct 22810 TAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCAC 22751 Query 63384 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 63443 | || || || || || || || || |||||||| ||| |||||| | || || | Sbjct 22750 AGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAGC 22691 Query 63444 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503 | || | ||| | ||| |||||| || | || || || || || |||| Sbjct 22690 ACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAA 22631 Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63562 | | || | || | | || || || || ||||| || ||||| || | ||| Sbjct 22630 AGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCG-TGA 22572 Query 63563 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63622 || || || || |||||||| | ||| || || || | ||| | | |||| | | Sbjct 22571 ATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCATCGAGA 22512 Query 63623 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTC 63680 | | ||| ||| ||| | ||||| || || || || | ||| ||||| |||| Sbjct 22511 CGTAGAAGGTATGATCGTTCAAGTGTTTTGAAGCCGAAGTATTGGTAGTTGAAA--TCTC 22454 Query 63681 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC--ATGGT 63738 | || || | |||| | |||||||||| |||| || | | | || ||| | ||| | Sbjct 22453 GGTCATAGACAATAGCAGAGTTGAGTTCCTCCTCATGTCTCATGAC-GCATTCGAATGTT 22395 Query 63739 AATACTTG-AAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAAT 63797 | |||| ||| |||||| | | | |||||| | || || ||| | | |||||| Sbjct 22394 --TCCTTGCTAATCATAGGAGATGGCGTGCCATTTCTTGGGTTTGTATATTGGTATAAAT 22337 Query 63798 CCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTC 63857 | || || | ||| |||| || |||| |||||| ||||| || || || || | Sbjct 22336 CGCGGATAACATGCGAGAATTGTTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATAC 22277 Query 63858 TAGCGGCTAGAATGGCATAATCCGGATG 63885 ||| ||||||||||||||||| ||||| Sbjct 22276 GAGCAGCTAGAATGGCATAATCGGGATG 22249 >seq2055 Length=75196 Score = 125 bits (138), Expect = 9e-24 Identities = 353/534 (66%), Gaps = 15/534 (3%) Strand=Plus/Minus Query 32354 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 32413 || |||||| || |||||||| ||||| || | || ||||| || || || ||||| Sbjct 73740 AGCCATAACACCGGCCTTTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACC 73681 Query 32414 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATA-AAttttt--tt 32470 | || || || || |||||||| |||||||| |||||| || || ||||| | || Sbjct 73680 AGCCAAGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTT 73621 Query 32471 AAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTC 32530 | ||||| | | | | ||| || || || || || ||| ||||| | | Sbjct 73620 A---CCCAAAGCCATGAGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTT 73564 Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 32590 | ||||| || | || | ||||||||| | || | |||||||| || || Sbjct 73563 GGAGTTCATGCCCAAGAGAGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTC 73504 Query 32591 GACCGCGTCTGTTATAATAGATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATG 32647 || || || || || | | |||| || | || ||| | || || | | | ||| Sbjct 73503 AACGGCTTCGGTAATGACA--TCTTGAACGGCTTGCTTGGATGGGCGG-TGCTTGAGATG 73447 Query 32648 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 32707 || | | |||||||||||| ||| |||||||| || | || | |||||| Sbjct 73446 AGAGAAGAGAAGGCATGCGAAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTT 73387 Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 ||| || || ||||||| ||| || |||||||| || ||||| || ||||| || || || Sbjct 73386 GGAGAAGGTAAGTCCGGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGA 73327 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827 || || ||||| || ||||| || || || || || | || | | || | || Sbjct 73326 GCCGGAGAAGAAGATACCTTCAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGA 73267 Query 32828 G---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 | |||| || ||||| || |||||| ||||||||||| || | ||||| Sbjct 73266 GTTCTTGTCTTGGATCCATTTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 73213 Score = 95.1 bits (104), Expect = 2e-14 Identities = 223/334 (67%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCA--TTACTATCTTTAACATATGTATCAA 32940 ||||| |||||||| || || || | |||| | || || | || | |||||| || | Sbjct 73155 GTCTCAATAGCATTGAACAGGTATGTCTTTTGAGCTTGCT--CCTTGATATATGTGTCGA 73098 Query 32941 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000 | | |||| || |||| || || ||||| || || ||||| || ||||| |||| Sbjct 73097 TGAGAAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAAAAGC 73038 Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTA 33060 ||| ||||| | || || ||||| | |||| ||| | || || || || || | Sbjct 73037 ATCGTGCCTCTGGGATTTGAACTTCGCCGCTGAATCTTTCAACCAAGTTCTCGTTGACAA 72978 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33120 ||||||| ||||| || || || | ||||| || || || ||||| Sbjct 72977 TTCCGTCGGATGCTGCGAAGAATGCAAGAACATGGGAGATGAAGTAACGCTCGTCGTCAT 72918 Query 33121 TTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 33177 | ||| | || ||| || | | ||| || || | ||| | ||||| | ||||| | Sbjct 72917 TGAGTCTGTTGCTCCAGTCGTGAAGATCCTTTGACAAATCGATCTCTTCTGCGGTCCAGA 72858 Query 33178 ATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | |||||||||||||| || ||||| | |||||| Sbjct 72857 AAGATGCCTCTGCCTTCTTGTACATCTGCCAGAT 72824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633611375278400