Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2089 116 3e-21 seq2210 104 2e-17 >seq2089 Length=24093 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || ||| ||||||| |||| || ||||| || Sbjct 11599 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 11658 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || || |||||||||| Sbjct 11659 GACACCATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACC 11716 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || ||||| || ||| | ||||||| ||||| | ||| |||| Sbjct 11717 AACAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGACTACA 11776 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 | || ||||| || ||||| || || || ||| || Sbjct 11777 ACATCCAAAAGGAGTCCACTCTCCACTTGGTGTTA 11811 >seq2210 Length=20483 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || || ||||| |||||||||||||| | ||||| |||||||||||| | ||| Sbjct 17364 GACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGCAAACAACTCGAA 17423 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| |||||| || |||||||||| || || || || || || || || || || || Sbjct 17424 GATGGTCGCACCTTGAGCGATTACAACATCCAGAAGGAGTCTACTCTCCACTTGGTCCTC 17483 Query 25212 AGGCT 25216 || || Sbjct 17484 AGACT 17488 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || |||| ||| | ||||| || ||||| Sbjct 18010 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATTACATTGGAAGTAGAATCGTCA 18069 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | ||| || ||| || || || || ||||||||||| ||| Sbjct 18070 GATACTATTGATAATGTTAAGTCGAAGATCCAGGATAAGGAGGGCATTCCACCTGATCAA 18129 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || || || |||| | || | ||||||||| Sbjct 18130 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGCAGAACCCTTTCGGATTACAAT 18189 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||| ||| | || || ||||| Sbjct 18190 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCT 18221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 25009 TTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG 25068 |||| |||||| | || || || |||| || |||| || || || || ||||| |||| Sbjct 17564 TTGTTAAGACTCTCACGGGAAAGACCATTACCCTCGAGGTTGAATCTTCCGACACCATCG 17623 Query 25069 A----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 | |||| || | || | ||| ||||| ||||| || || || || ||||| || Sbjct 17624 ACAACGTCA---AATCGAAGATTCAA-GACAAGGAAGGCATCCCTCCCGATCAACAACGT 17679 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || || |||||||||||| | || |||| || || | ||||||||| || || Sbjct 17680 TTGATCTTCGCCGGCAAACAACTCGAGGATGGCCGTACACTCTCCGATTACAACATCCAG 17739 Query 25185 AAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || || || || || || || || || || Sbjct 17740 AAGGAGTCTACCCTTCACTTGGTCCTCAGACT 17771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433314247794260