Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2055 114 1e-20 >seq2055 Length=75196 Score = 114 bits (126), Expect = 1e-20 Identities = 498/782 (64%), Gaps = 68/782 (9%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||| || || || ||||| || ||| | | | ||||| || | ||| | || Sbjct 73599 ATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCCAAGAGA-GCAC 73541 Query 92986 A-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | || ||||| ||||||||||| |||| ||||||| |||||||||| | | || ||| Sbjct 73540 AAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCAACGGCTTCGGTAATGACATCTT 73481 Query 93045 TTACT-CTACTATTTGG-TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 || || | |||| ||| || || || | | | | | ||| || || || Sbjct 73480 GAACGGCT--TGCTTGGATGGGCGGTGCTTGAGATGAGAGAAGAGAAGGCATGCGAAATC 73423 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAG 93162 ||| || | ||| || || || || || | || ||| ||| || | || | | || Sbjct 73422 GGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCGGCCATGAG 73363 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 || || ||||||||||| || || || || || || || || || |||||||| || Sbjct 73362 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCAAC 73303 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-CT--GATCCATTT 93279 || || || || || | ||||| ||||| | ||| || || || ||||||||| Sbjct 73302 AGCAGCGAAAGCGACGAGACGTTGAGCAAAGGT---GGAGTTCTTGTCTTGGATCCATTT 73246 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGG---TAG------TGTT--TCGATA--- 93325 | |||||| ||||| || ||||| || ||||| ||| |||| | |||| Sbjct 73245 GACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTAGCAAGGTTGTTAGTTGATATAT 73186 Query 93326 -GCGTTA-AATAGGTAATCTCG-----CTCGTCCGAATCTC---------GTATGT---- 93365 |||| | ||| || ||| | || ||| ||| | |||||| Sbjct 73185 CGCGTAAGAATGTGTGATCATGACTTACTGGTCTCAATAGCATTGAACAGGTATGTCTTT 73126 Query 93366 -------------------ATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTC 93406 |||| ||||| | ||||| || |||| || |||| ||| Sbjct 73125 TGAGCTTGCTCCTTGATATATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGGATGTTC 73066 Query 93407 TCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA 93466 ||||| |||||||| ||||| || |||| || || | ||| || ||||| Sbjct 73065 TCCATCATGATTTGGAAACCGTAAAAGCATCGTGCCTCTGGGATTTGAACTTCGCCGCTG 73006 Query 93467 AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATA 93526 ||||| || || | || || ||||| || || ||||||||||| || || || | | | Sbjct 73005 AATCTTTCAACCAAGTTCTCGTTGACAATTCCGTCGGATGCTGCGAAGAATGCAAGAACA 72946 Query 93527 TGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTTTT 93583 || || || | ||| || || || || || ||| ||| ||||| ||| Sbjct 72945 TGGGAGATGAAGTAACGCTCGTCGTCATTGAGTCTGTTGCTCCAGTCGTGAAGATCCTTT 72886 Query 93584 GAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCAT 93643 || | ||||| ||||| | ||||| || ||||| ||||| || |||||||| | ||| Sbjct 72885 GACAAATCGATCTCTTCTGCGGTCCAGAAAGATGCCTCTGCCTTCTTGTACATCTGCCAG 72826 Query 93644 AT 93645 || Sbjct 72825 AT 72824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556842674180960