Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2210 143 2e-29 seq1994 102 7e-17 seq2089 100 2e-16 >seq2210 Length=20483 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || ||||| | || || || | | Sbjct 17782 ATGCAAATCTTCGTCAAGACCCTCACTGGGAAGACAATCACTTTGGAGGTTGAGTCATCG 17841 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || ||||| ||||||||||| ||||| |||||| Sbjct 17842 GACACCATCGACAATGTGAAGTCCAAGATCCAAGATAAGGAGGGTATCCCACCTGATCAA 17901 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || ||||| |||||| |||||| | || ||||||||| Sbjct 17902 CAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTTTCGGATTACAAC 17961 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| ||||| ||| ||||||| || Sbjct 17962 ATCCAAAAGGAATCGACCTTACATTTGGT 17990 Score = 129 bits (142), Expect = 5e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22229 TTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGG 22288 ||||||| ||| | || || || || | || || || || ||| | |||| ||| | | Sbjct 17564 TTGTTAAGACTCTCACGGGAAAGACCATTACCCTCGAGGTTGAATCTTCCGACACCATCG 17623 Query 22289 ACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTA 22348 || | ||||| || |||||||||||||| || || || ||||||||||||||| | | Sbjct 17624 ACAACGTCAAATCGAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAACAACGTTTGA 17683 Query 22349 TATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408 | || ||||||||||| | |||||| ||| || |||||||||||||||| || || | Sbjct 17684 TCTTCGCCGGCAAACAACTCGAGGATGGCCGTACACTCTCCGATTACAACATCCAGAAGG 17743 Query 22409 AATCCACCATACATTTAGT 22427 | || ||| | || || || Sbjct 17744 AGTCTACCCTTCACTTGGT 17762 Score = 118 bits (130), Expect = 9e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||||||||| || ||| ||| ||||||| | ||| || ||||| Sbjct 17295 ACCGGAAAGACCATCACTCTTGAGGTCGAATCCAGCGATACCATTGACAATGTCAAATCC 17354 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || ||||| ||| | || || ||||||||| Sbjct 17355 AAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGCAAA 17414 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | || ||| |||||| | |||||||||||| || || || || || Sbjct 17415 CAACTCGAAGATGGTCGCACCTTGAGCGATTACAACATCCAGAAGGAGTCTAC 17467 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || | || | ||||| ||| | | Sbjct 18010 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATTACATTGGAAGTAGAATCGTCA 18069 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || || || || |||||||| |||||||| |||||| Sbjct 18070 GATACTATTGATAATGTTAAGTCGAAGATCCAGGATAAGGAGGGCATTCCACCTGATCAA 18129 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| || || ||||| |||||| | | ||| | || |||||||| Sbjct 18130 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGCAGAACCCTTTCGGATTACAAT 18189 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| ||| |||| | || || || Sbjct 18190 ATTCAAAAGGAAAGCACCTTGCACTTGGT 18218 >seq1994 Length=27662 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || |||| ||| | ||| || |||| Sbjct 4054 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCC 3995 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| ||||||||||||||| | || || || || || Sbjct 3994 AAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTTGATCTTCGCTGGAAAG 3935 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || ||||| || || |||| ||||||||||| ||||| Sbjct 3934 CAATTGGAGGACGGACGTACTCTCTCAGATTACAACATCCAAAA 3891 >seq2089 Length=24093 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || ||||| |||| || || || || | | Sbjct 11599 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 11658 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || ||||| || ||| Sbjct 11659 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAA 11718 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || || | || ||| ||||||| | ||||| |||||| Sbjct 11719 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGACTACAAC 11778 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||||| | || || || || || | || || ||| Sbjct 11779 ATCCAAAAGGAGTCCACTCTCCACTTGGTGTTACGTCTCCGTGGTGGT 11826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419714679407260