Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2210 129 5e-25 seq2089 89.7 4e-13 >seq2210 Length=20483 Score = 129 bits (142), Expect = 5e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| ||||| | || || || | ||||| || || || |||||||||||| Sbjct 17500 ATACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCG 17441 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || ||| |||||| |||||||| || ||| | || | |||||||||||| ||| Sbjct 17440 CTCAAGGTGCGACCATCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGA 17381 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| ||| | | |||| ||| ||| |||||||| Sbjct 17380 GGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCGCTGGATTCG 17321 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | || | || || ||||| Sbjct 17320 ACCTCAAGAGTGATGGTCTTTCCGGT 17295 Score = 118 bits (130), Expect = 9e-22 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| ||||| | || || || | ||||| || || || |||||||||||| Sbjct 17783 ATACCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCG 17724 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| || |||||||| || ||| |||| | ||| ||||| || ||| Sbjct 17723 GAGAGTGTACGGCCATCCTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGA 17664 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||| ||| | | || | |||||||| ||||| Sbjct 17663 GGGATGCCTTCCTTGTCTTGAATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCA 17604 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 || || | ||| | || || || || ||||| || |||| Sbjct 17603 ACCTCGAGGGTAATGGTCTTTCCCGTGAGAGTCTTAACAA 17564 >seq2089 Length=24093 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || || || | || || || ||||| |||||||| ||| Sbjct 11826 ACCACCACGGAGACGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 11767 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||| ||||| || || ||| |||| | ||||||||||| || || Sbjct 11766 AAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGG 11707 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || ||||| ||||| || | | || | |||||| | || || || Sbjct 11706 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAAC 11647 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || | ||| | |||||||| || || || || || || ||||||||| || Sbjct 11646 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 11595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420121066509648