Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2055 232 1e-55 seq1009 140 6e-28 >seq2055 Length=75196 Score = 232 bits (256), Expect = 1e-55 Identities = 370/517 (72%), Gaps = 13/517 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 || ||||||||||||||||| |||||||| |||| |||||| | || | || | | || Sbjct 73213 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATCCA-AGACAAGAACTCCAC 73271 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | || || || || | || || || || ||||||||||| ||| |||| Sbjct 73272 CTTTGCTCAACGTCTCGTCGCTTTCGCTGCTGTTGAAGGTATCTTCTTCTCCGGCTCCTT 73331 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 |||||||||||||||||||||| || ||| || ||| ||||||| |||||||| |||| Sbjct 73332 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTC-ATGGCCGGACTTACCTTCTCCAACG 73390 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 |||||||| | | || ||||| || || | || || || ||||| || ||||| | Sbjct 73391 AACTCATCTCCCGTGATGAGGGTCTCCACACCGATTTCGCATGCCTTCTCTTCTC---TC 73447 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 | |||| |||| || || ||| | || | | |||| || || ||||| || | Sbjct 73448 ATCTCAAGCACCGCCCATCCAAGCAAGCCGTTCAAGATGTCATTACCGAAGCCGTTGAAA 73507 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGAC 42989 ||||| | || ||| | || || | || || ||| | || | ||||||||| | || Sbjct 73508 TCGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTG-CTCTCTTGGGCATGAACTCCAAC 73566 Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCA 43047 |||||| |||| |||||| ||| ||| || || | |||||| || | ||||| | Sbjct 73567 CTCATGAAGCAA-TACATCGAGTTCGTTGCTGATCGTCTCCTCATGGC-TTTGGGTAACG 73624 Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107 | ||||||| | | ||| |||||||| |||||||||||||| |||| || | Sbjct 73625 ACAAATTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCTTGGCTGGTA 73684 Query 43108 AGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 |||||||||| ||||||||| | || | || ||||| Sbjct 73685 AGACCAACTTCTTCGAGAAGAGAGTTGGTGATTACCA 73721 >seq1009 Length=94825 Score = 140 bits (154), Expect = 6e-28 Identities = 448/685 (65%), Gaps = 10/685 (1%) Strand=Plus/Minus Query 244760 ATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAG 244819 || || || |||| || || ||| ||| |||||| || || ||||| |||||||| Sbjct 23306 ATAGTACCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAA 23247 Query 244820 GGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 || ||||||||| || || |||| | || ||| || | |||||||| Sbjct 23246 GGATTTCCGGTCTCGGTTTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGATA 23187 Query 244880 GTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCC 244939 ||| ||||| ||||||| | |||||| | ||| || ||||||||||| || Sbjct 23186 GTCTTGCGACCCTTGCCTGCCTTCTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCACCA 23127 Query 244940 CAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACTCGCCGCCGT 244997 | || || | | ||| || || || | |||||||||||| |||| || ||| | Sbjct 23126 TAAACATCTGCCAAGCCTGGACATTCGTTG--GGGCACATGAGAGTCCATTCTCCGTTCT 23069 Query 244998 CCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCC 245057 | || | || |||||| || || || ||||| | ||| | |||||| || | | | Sbjct 23068 TTTCAACTCGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCAC 23009 Query 245058 TCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCC 245117 || ||| ||| ||||| | || || | || || || || || | |||| Sbjct 23008 GAACTTCTTCCTTACCATGATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCC 22949 Query 245118 AGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCC 245177 | ||||| | ||| ||||| | || || || |||||||| || || |||| || ||| Sbjct 22948 ATGGCTCAAGGTAAACAGCAAAAGCACCAGGACGCTTGTTACCACCTTGGT-CAACAT-A 22891 Query 245178 TCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGT 245235 ||| | || | |||||| | || || |||| || || |||||||||| || ||||| Sbjct 22890 TCTGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGT 22831 Query 245236 GCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGC 245295 || |||||| || || | | | || || ||| | || | || || || Sbjct 22830 ACCAGCGATGTATGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGC 22771 Query 245296 GTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGA 245355 | ||| ||||| | ||| ||| |||| | ||||| || || || || || ||| Sbjct 22770 ATTCTTTGAGATCATGGCACAGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTC 22711 Query 245356 CTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG-GGGCTGCACGAGTTGAACA 245414 |||||||| || || ||||| || || || | | ||||| || | | || ||| | Sbjct 22710 CTTCATGTCGATGAGGAAGCACGATGAAAG-TTGTGCTTGTGGAGTACCCGCAGAGAAGA 22652 Query 245415 GAGTGGGGCTGGCGTGGGTAAAGTA 245439 | || ||| ||| || |||||||| Sbjct 22651 GTGTTGGGGAGGCATGTGTAAAGTA 22627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944308461759040