Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05]
2,604 sequences; 40,732,201 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq2089 129 1e-24
seq2210 127 5e-24
seq1994 111 4e-19
seq2055 100 7e-16
seq1787 87.8 4e-12
>seq2089
Length=24093
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || ||||||| || ||||| || ||||| | ||| ||||| ||||||
Sbjct 11789 TCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 11730
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| |||||||| | ||||||||| || || |||||||| || | || || ||
Sbjct 11729 ATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 11670
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || || || ||||| ||||| || || || || || |||||||||
Sbjct 11669 TCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACG 11610
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 11609 AAGATCTGCAT 11599
>seq2210
Length=20483
Score = 127 bits (140), Expect = 5e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| || || | || || | || | |||||||| ||||| ||||| || ||
Sbjct 18239 TGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCC 18180
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || || | || || || || || |||||||| ||||||| || |||||| | |
Sbjct 18179 GAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGT 18120
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || ||||||||||| |||| || || || || |||| ||| |||||||
Sbjct 18119 GGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGACGATTCT 18060
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | || || ||||| || |||| |||||||| || || |||||
Sbjct 18059 ACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | ||| | || ||| |||||||| || || || |
Sbjct 18008 CCACCACGGAGACGAAGGACCAAATGTAAGGTCGATTCCTTTTGGATGTTGTAATCCGAA 17949
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || || || || || || ||||| ||||| |||||| | ||||
Sbjct 17948 AGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGG 17889
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| ||||| || | ||||| || || || | || || || ||
Sbjct 17888 ATACCCTCCTTATCTTGGATCTTGGACTTCACATTGTCGATGGTGTCCGATGACTCAACC 17829
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| |||||||| || || ||||||||||| || |||||
Sbjct 17828 TCCAAAGTGATTGTCTTCCCAGTGAGGGTCTTGACGAAGATTTGCAT 17782
>seq1994
Length=27662
Score = 111 bits (122), Expect = 4e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|||||||| || || || | ||| || |||||||| || ||||| ||||| |||||||||
Sbjct 3891 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCCTCCAATTGCTTTCCAGCGAAGATC 3950
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
| ||| |||||| || ||||| || || |||||||| || | || || || ||
Sbjct 3951 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4010
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | ||| || || || || || ||||| ||||| || || || |||||||||||
Sbjct 4011 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 4069
>seq2055
Length=75196
Score = 100 bits (110), Expect = 7e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157
||||| ||| || ||| |||| ||| | || ||| | || ||| || | | ||
Sbjct 73495 GAAGCCGTTGAAATCGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTCTTGGGC 73554
Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217
||||| || | |||||||| ||||| ||||| ||||| ||||||||| || ||| |||
Sbjct 73555 ATGAACTCCAACCTCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTCATGGCT 73614
Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277
| ||| | || ||| | ||||| || | || || |||| ||| ||||| || ||
Sbjct 73615 TTGGGTAACGACAAATTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCC 73674
Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAA 269325
| | || ||||| ||||||||||| ||| | || | || || |||
Sbjct 73675 TTGGCTGGTAAGACCAACTTCTTCGAGAAGAGAGTTGGTGATTACCAA 73722
>seq1787
Length=38984
Score = 87.8 bits (96), Expect = 4e-12
Identities = 147/210 (70%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 325391 CAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGA 325450
|| |||| |||||| || ||| ||| || || ||| || |||||| |||||
Sbjct 28513 CAATTGACGTTATTCGAACCAACAAAATTTTGGGCGAGGCCAACAATGGTCATTTGCATC 28454
Query 325451 GATGCTTCGCCATGGTGATAGGCGCTATGCT---CTGCAACGTAACCGCTGAACTGTGCA 325507
|| ||||| |||||||||||||| | | || ||| || |||||| | | ||
Sbjct 28453 GAAGCTTCTCCATGGTGATAGGC-CGAGACTTGACTG--ACATAACCGGCAAGTTCAACA 28397
Query 325508 ACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAA 325567
||||||| ||| | | | |||||| ||||||| | ||| || |||||||||||
Sbjct 28396 ACCTTCATGTCATTTATGAGATTGCGTTTGAAAGAAGCATACATTACTTTCCGTTGTCCG 28337
Query 325568 GGTTTGAAACCATCAACGACCGACGGAATG 325597
|| |||| ||| |||| ||| || ||||||
Sbjct 28336 GGCTTGAGACCGTCAATGACGGAAGGAATG 28307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179615042305512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |