Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2089 129 1e-24 seq2210 127 5e-24 seq1994 111 4e-19 seq2055 100 7e-16 seq1787 87.8 4e-12 >seq2089 Length=24093 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| || ||||| || ||||| | ||| ||||| |||||| Sbjct 11789 TCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 11730 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||||| | ||||||||| || || |||||||| || | || || || Sbjct 11729 ATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 11670 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| || || || || || ||||||||| Sbjct 11669 TCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACG 11610 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11609 AAGATCTGCAT 11599 >seq2210 Length=20483 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | || || | || | |||||||| ||||| ||||| || || Sbjct 18239 TGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCC 18180 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || | || || || || || |||||||| ||||||| || |||||| | | Sbjct 18179 GAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGT 18120 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||||||||| |||| || || || || |||| ||| ||||||| Sbjct 18119 GGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGACGATTCT 18060 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || |||| |||||||| || || ||||| Sbjct 18059 ACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | ||| | || ||| |||||||| || || || | Sbjct 18008 CCACCACGGAGACGAAGGACCAAATGTAAGGTCGATTCCTTTTGGATGTTGTAATCCGAA 17949 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || || || || || || ||||| ||||| |||||| | |||| Sbjct 17948 AGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGG 17889 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| || | ||||| || || || | || || || || Sbjct 17888 ATACCCTCCTTATCTTGGATCTTGGACTTCACATTGTCGATGGTGTCCGATGACTCAACC 17829 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| |||||||| || || ||||||||||| || ||||| Sbjct 17828 TCCAAAGTGATTGTCTTCCCAGTGAGGGTCTTGACGAAGATTTGCAT 17782 >seq1994 Length=27662 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || || || | ||| || |||||||| || ||||| ||||| ||||||||| Sbjct 3891 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCCTCCAATTGCTTTCCAGCGAAGATC 3950 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||| |||||| || ||||| || || |||||||| || | || || || || Sbjct 3951 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4010 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || || || ||||| ||||| || || || ||||||||||| Sbjct 4011 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 4069 >seq2055 Length=75196 Score = 100 bits (110), Expect = 7e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 ||||| ||| || ||| |||| ||| | || ||| | || ||| || | | || Sbjct 73495 GAAGCCGTTGAAATCGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTCTTGGGC 73554 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217 ||||| || | |||||||| ||||| ||||| ||||| ||||||||| || ||| ||| Sbjct 73555 ATGAACTCCAACCTCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTCATGGCT 73614 Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277 | ||| | || ||| | ||||| || | || || |||| ||| ||||| || || Sbjct 73615 TTGGGTAACGACAAATTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCC 73674 Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAA 269325 | | || ||||| ||||||||||| ||| | || | || || ||| Sbjct 73675 TTGGCTGGTAAGACCAACTTCTTCGAGAAGAGAGTTGGTGATTACCAA 73722 >seq1787 Length=38984 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 325391 CAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGA 325450 || |||| |||||| || ||| ||| || || ||| || |||||| ||||| Sbjct 28513 CAATTGACGTTATTCGAACCAACAAAATTTTGGGCGAGGCCAACAATGGTCATTTGCATC 28454 Query 325451 GATGCTTCGCCATGGTGATAGGCGCTATGCT---CTGCAACGTAACCGCTGAACTGTGCA 325507 || ||||| |||||||||||||| | | || ||| || |||||| | | || Sbjct 28453 GAAGCTTCTCCATGGTGATAGGC-CGAGACTTGACTG--ACATAACCGGCAAGTTCAACA 28397 Query 325508 ACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAA 325567 ||||||| ||| | | | |||||| ||||||| | ||| || ||||||||||| Sbjct 28396 ACCTTCATGTCATTTATGAGATTGCGTTTGAAAGAAGCATACATTACTTTCCGTTGTCCG 28337 Query 325568 GGTTTGAAACCATCAACGACCGACGGAATG 325597 || |||| ||| |||| ||| || |||||| Sbjct 28336 GGCTTGAGACCGTCAATGACGGAAGGAATG 28307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179615042305512