Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2055 111 3e-19 seq1787 98.7 2e-15 >seq2055 Length=75196 Score = 111 bits (122), Expect = 3e-19 Identities = 299/452 (66%), Gaps = 4/452 (1%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCGGGAGTTT 243347 |||||| | ||||||||||| | | ||| ||||||||||| | || ||||| || Sbjct 73273 TTTGCTCAACGTCTCGTCGCTTTCGC-TGCTGTTGAAGGTATCTTCTTCTCCGGCTCCTT 73331 Query 243348 CTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 243407 | | ||||||| ||||| ||| ||| | ||| | || || | || ||||| Sbjct 73332 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCAACGA 73391 Query 243408 GTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCT 243467 ||||| || || ||||| || ||| | |||| ||| | | || | || Sbjct 73392 ACTCATCTCCCGTGATGAGGGTCTCCACACCGATTTCGCATGCCTTCTCTTCTCTCATCT 73451 Query 243468 CCAGAACAAGCTA-CCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACG 243526 | || || | | ||| | | || |||| | |||| || ||||| ||||||| || Sbjct 73452 CAAGCACCGCCCATCCAAGCAAGCCGTTCAAG-ATGTCATTACCGAAGCCGTTGAAATCG 73510 Query 243527 AAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCA 243586 | | |||||| | ||| ||| |||| || || | ||||||||||| | |||| Sbjct 73511 AGCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTCTTGGGCATGAACTCCAACCTCA 73570 Query 243587 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG 243646 || || |||||||| ||||| || || || | |||| || | ||| | || ||| Sbjct 73571 TGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTCATGGCTTTGGGTAACGACAAAT 73630 Query 243647 TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTA 243706 | ||||| || | ||||| || | ||| |||||| ||| || | || || || | Sbjct 73631 TCTACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCTTGGCTGGTAAGACCA 73690 Query 243707 ACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||||||||| ||| | || ||||||| ||| Sbjct 73691 ACTTCTTCGAGAAGAGAGTTGGTGATTACCAA 73722 >seq1787 Length=38984 Score = 98.7 bits (108), Expect = 2e-15 Identities = 198/291 (68%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 ||| |||| |||||||| || ||||| || || | || ||||| | ||| | ||| Sbjct 28594 AGTCTTGTAAAAATATAACGGGCACTGGCAGCGTCGCTTCCTCCCTGAAGTCTAGTACCA 28535 Query 297491 AACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGG 297550 || | || ||| | || |||| |||||| || ||| ||| || || ||| Sbjct 28534 AAATTTCCACTTGGCTCGAGACAATTGACGTTATTCGAACCAACAAAATTTTGGGCGAGG 28475 Query 297551 TTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT---CTGCA 297607 || |||||| ||||| || ||||| |||||||||||||| | | || ||| Sbjct 28474 CCAACAATGGTCATTTGCATCGAAGCTTCTCCATGGTGATAGGC-CGAGACTTGACTG-- 28418 Query 297608 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAA 297667 || |||||| | | ||||||||| ||| | | | |||||| ||||||| | | Sbjct 28417 ACATAACCGGCAAGTTCAACAACCTTCATGTCATTTATGAGATTGCGTTTGAAAGAAGCA 28358 Query 297668 TATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATG 297718 || || ||||||||||| || |||| ||| |||| ||| || |||||| Sbjct 28357 TACATTACTTTCCGTTGTCCGGGCTTGAGACCGTCAATGACGGAAGGAATG 28307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102843203787400