Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1009 192 7e-44 seq2055 156 5e-33 >seq1009 Length=94825 Score = 192 bits (212), Expect = 7e-44 Identities = 930/1455 (64%), Gaps = 47/1455 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || || |||||||| || ||||| | ||| ||||| || | |||||| || | Sbjct 24260 CGTAGATAGTACATTCCGGTCTTCAAACCCAATTTCCAACCAGCAAAATGCATAGATGTA 24201 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | ||| | ||| ||| | |||| | |||||| ||| ||||||||||| || Sbjct 24200 ATCTTACCCATTGTAGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAAT 24141 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 113774 |||||||| || ||||| | || || || ||| | || ||||||| || || Sbjct 24140 GCACCACGATCAGCAGCCATTTGAA-CA-ATTGTTCGTTGAGAGATTTCCCAAACGGTCT 24083 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834 ||||||| ||| || ||| |||| |||| ||| ||||||||||| ||||| | Sbjct 24082 TGTAGAGAGCCTTGATGTCAGCTGGAATATTGGGGATGTTTTGGATGGATCCACCATCAG 24023 Query 113835 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 113894 | || | | |||||| | | ||||||||||| || | || || | | | Sbjct 24022 CAATGATACGGTTCTTCATGTTGTCAGACCAGAGACCCATATCGACAAGGTCTTTGAGAA 23963 Query 113895 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 113952 | ||| ||| || || || || || || || || | ||||| || | Sbjct 23962 GCCATGG--ATTAACGACTTGGAATTCTCCGGCAAGAACACGACGGGAGTAGATGTTTGA 23905 Query 113953 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGA-TTTGGGCGGTGGAGGCTGTGGGCA 114011 ||||| || || || || |||||| | |||||| |||||| ||| || || |||| Sbjct 23904 GGTGTAAGGTTCGAAACATTCATTGA-AGCCAAGAATTTGGGATGTGCTAGCAGTAGGCA 23846 Query 114012 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGT 114071 ||||||| | ||| ||| |||||||| || | || | | ||| || ||| | || || Sbjct 23845 TGGGTGCAACGAGGAGGGAGTTACGGATTCCGTGTTGCTTGATGGATTGCTTCAAGGAGT 23786 Query 114072 CCCAGTCGTAGT--TGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTG 114129 |||| || | | || | || | | | |||||||||| | ||||| || | Sbjct 23785 CCCAATCCCACAAATCAG-TAGGTGTAACACC-CCACATATCATATTGGAGTTCTCCCTT 23728 Query 114130 GGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCT 114189 ||| |||| || || | | | || ||||||||||| ||| || | ||| | Sbjct 23727 CGAGACTGGAGAGCCTTGATAAGTGTCGTATGGGCCAAGTTCCTTTGCAATCTCGACGGA 23668 Query 114190 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 114249 | | ||| ||||| || || ||||| ||||| | || | |||||| || Sbjct 23667 TGAGGTCAAGGCGGCGTGGTAGATAGTCTCGAAAATTTGGATGTTGAGGTGCTTGGCTTC 23608 Query 114250 GTCGGAATCAAACGCGAGTCGGC-ACAAAATAAATACATCCGCGAGACCTTGGACACCGA 114308 ||| || || | || || | || ||| |||| || |||||||| ||||||| Sbjct 23607 TGGGGAGTCGAATGGAAGACGAAGAGCCAAGAAAG-CATCAGCAAGACCTTGAACACCGA 23549 Query 114309 GGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTC 114367 | || || | ||||| | ||| ||||| || ||| | || ||||| |||| Sbjct 23548 CAGCGATAGGTCTATGTCGGAAATTGCTCTTTCTGGCT-TCTGCGACTGGATAGTAATTG 23490 Query 114368 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 114427 | || || | | | || | ||| | ||||||| | || |||||||||| | Sbjct 23489 ATGTCAATGATCTTGTTCAAGTTTCTAACAACAACCTGAACAACCTCGTGAAGCTTTTGG 23430 Query 114428 TAATCAAAACTGCGAGTCTC-TTCAT--TGACATACTTAGGAAGGGCGATTGACGCCAGA 114484 | ||| || | | ||| ||||| |||| | | || | ||||| || |||| Sbjct 23429 AAGTCATAAGTTCC---CTCATTCATGTTGACGAATGTTGGCAAAGCGATAGAAGCCAAG 23373 Query 114485 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 114544 ||||| || |||||| ||| |||||| | ||||| || ||||| || || Sbjct 23372 TTACAGCAAGCAACCTCATCTGGTGCAGAGTACTCCACGATTTCTGTGCACAAGTTGGAG 23313 Query 114545 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 114604 || ||| || || | ||||||||| || ||| |||| || ||||| ||||||||| Sbjct 23312 CTTCGAATAGTACCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGC 23253 Query 114605 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGC 114663 ||| | || | || ||||| ||||| | | |||||||| | ||| | | | | | | Sbjct 23252 ATGAAAGGATTTCCGGTCTCGGTTTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCC 23193 Query 114664 TGGCACAGTGGCGTTGGCTCGCCCCT------CCTCCTCGTACTTTGTGTAGAGGGCTTC 114717 | | | ||| ||| || |||| ||| |||||| |||||| || || Sbjct 23192 TTG-ATAGT---CTTG---CGACCCTTGCCTGCCTTCTCGTAACCCTCGTAGAGAGCCTC 23140 Query 114718 AAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCA 114777 ||||| ||||| | |||| | ||||| | | ||||| | ||||| ||| Sbjct 23139 GAACTCCTCACCATAAACATCTGCCAAGCCTGGACATTCGTTGGGGCACATGAGAGTCCA 23080 Query 114778 TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAG 114837 || || || ||||| ||||||||||| || || || ||||| | || ||||||| Sbjct 23079 TTCTCCGTTCTTTTCAACTCGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAG 23020 Query 114838 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 114897 ||| || ||| ||||||| | || ||||| ||| | || | || || | | Sbjct 23019 ATCGCGTGCACGAACTTCTTCCTTACCATGATTCTTACGTAGATCAAGGAACTCGAAAAC 22960 Query 114898 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGC 114951 |||||| ||||| || || ||||| || || | | || | |||| |||| | Sbjct 22959 ATCCGCATGCCATGGCTCAAGGTAAACAGCAAAAGCACC---AGGACGCTTGTTACCACC 22903 Query 114952 CTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGA 115011 |||| ||||| || || ||| || || || || ||||| |||| ||||| | ||| Sbjct 22902 TTGGTCAACATATCTGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTAGA 22843 Query 115012 TTGGCCATTTGTCCC 115026 | ||||| || || Sbjct 22842 GTTTCCATTGGTACC 22828 >seq2055 Length=75196 Score = 156 bits (172), Expect = 5e-33 Identities = 351/522 (67%), Gaps = 24/522 (5%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||| | ||||||||||||||| ||||| || ||||| ||| |||||||| Sbjct 73719 GTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTCTCCAT 73660 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || || |||||||| | || || | | |||| | |||| || | | ||||||| Sbjct 73659 GAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTTACCCAAAGCCAT--GAGGAGA 73602 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 ||||| | ||| |||| ||||| | ||| | |||||||| || | ||| | Sbjct 73601 CGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCCAAGAGAGCA 73542 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || || || || | ||| | | ||| ||||| |||||||| | || | Sbjct 73541 CAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCAACGGCTTCGGTAATGACATCT 73482 Query 125996 TGAATGGTGTCCACCCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCA--- 126049 |||| || | | || | | || | || |||||| | |||| Sbjct 73481 TGAACGGCTTGCTTGGATGGGCGGTGCTTGAGATGAGA---GAAGAG----AAGGCATGC 73429 Query 126050 -AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || |||||||||||| ||||||||||||||||| || |||||| ||||| | Sbjct 73428 GAAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCGGC 73369 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 ||||||||| |||||||| | |||||| || | || || || ||||||||||| || Sbjct 73368 CATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACC 73309 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAA 126225 || ||| ||||| || | |||||| | |||||||| | || || |||| | Sbjct 73308 TTCAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTG---GAGTTCTTGTCTTGGAT 73252 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 126267 ||| || | ||||| | ||||| |||| ||| || || || Sbjct 73251 CCATTTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAAC 73210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597334156140320