Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2089 111 2e-19 seq2210 105 7e-18 >seq2089 Length=24093 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| |||||||| || | ||| ||||||||| || ||||| || | || || || | Sbjct 11814 ACGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCC 11755 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || ||||| || ||||| || | |||||| ||||| | ||| | | |||||| Sbjct 11754 ATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTT 11695 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || |||| | | | ||||| || || || |||| ||||| Sbjct 11694 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGAT 11635 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||||||||| || ||||| || ||||| ||||| Sbjct 11634 GGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11599 >seq2210 Length=20483 Score = 105 bits (116), Expect = 7e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032 |||||| |||| || | | ||| | |||||| ||||| ||||| ||||||||||||||| Sbjct 18245 ATTTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTG 18186 Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 ||||| | || || | | || || | |||||| || || || || | ||| || || Sbjct 18185 TAATCCGAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGA 18126 Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTC 42152 || | ||| | || |||||| ||| ||| || || | | | | || || | Sbjct 18125 TCAGGTGGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGAC 18066 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || | || ||||| || || || | ||||| |||||||||||||| Sbjct 18065 GATTCTACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543195118423360