Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1009 149 6e-31 >seq1009 Length=94825 Score = 149 bits (164), Expect = 6e-31 Identities = 600/937 (64%), Gaps = 26/937 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | ||||||||| || || || ||||| || | |||||| Sbjct 22462 AACTACCAATACTTCGGCTTCAAAACACTTGAACGATCATACCTTCTACGTCTCGATGGC 22521 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | |||| | || || || || || || | ||||| || ||| | || |||||||| | Sbjct 22522 AAGGTTGCAGAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGAT 22581 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACAT----------GCGGGACAAGAGGTA 93884 || || |||| || ||| || || |||| | | ||||| | Sbjct 22582 GATAT--CGAAAGT-------GCTATC-GAAACATATAACTTGATGTCGAACAAGTACTT 22631 Query 93885 TAC-CATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGT 93943 ||| |||| || |||| || || ||| ||||| || || |||| | || |||| Sbjct 22632 TACACATG-CCTCCCCAACACTCTTCTCTGCGGGTACTCCACAAGCACAACTTTCATCGT 22690 Query 93944 GTTTCCTGAT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGAC 94002 | ||||| || ||| | |||| || || || |||| ||||| | ||| | Sbjct 22691 GCTTCCTCATCGAC-ATGAAGGAGGATAGTATTGATGGTATTTACGACACTTTGAAGATC 22749 Query 94003 TGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCC 94062 ||||| | |||||||| | || || || || || ||| | ||| | ||||| Sbjct 22750 TGTGCCATGATCTCAAAGAATGCTGGTGGTATTGGTCTCAACATTCACAGAATCCGTGCT 22809 Query 94063 AGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGG 94122 | ||| | |||||| ||||||||||| | ||| ||||| | || ||||||||||| Sbjct 22810 ACTGGTGCATACATCGCTGGTACCAATGGAAACTCTAACGGTATTGTTCCTATGCTCCGA 22869 Query 94123 GTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTC 94182 || ||||||||| | || | || || ||||| |||||| | | | ||| |||| Sbjct 22870 GTTTTCAACAACACTGCCAGATATGTTGACCAAGGTGGTAACAAGCGTCCTGGTGCTTTT 22929 Query 94183 GCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAAC 94242 || || || || ||||| ||||| ||||| || | ||| | || || || ||||| Sbjct 22930 GCTGTTTACCTTGAGCCATGGCATGCGGATGTTTTCGAGTTCCTTGATCTACGTAAGAAT 22989 Query 94243 CACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTT 94302 || || || || | | || | || ||||||||||| | ||| | || || || Sbjct 22990 CATGGTAAGGAAGAAGTTCGTGCACGCGATCTCTTCTACGCCTTGTGGATTCCTGATCTA 23049 Query 94303 TTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCC 94362 || ||||| || || || || ||| | |||| ||| | || ||||| |||||||| Sbjct 23050 TTCATGAAGCGAGTTGAAAAGAACGGAGAATGGACTCTCATGTGCCCCAACGAATGTCCA 23109 Query 94363 GGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA-ATCGCA 94421 || || | || |||| ||| | || || | | || | ||||||| | ||| Sbjct 23110 GGCTTGGCAGATGTTTATGGTGAGGAGTTCGAGGCTCTCTACGAGGGTTACGAGAAGGCA 23169 Query 94422 GGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACA 94481 ||||||| | ||| ||| | ||| ||||| ||| | || | || | || Sbjct 23170 -GGCAAGGGTCGCAAGACTATCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCA 23228 Query 94482 GGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCA 94541 ||||| || | || | ||| | | ||| || | |||| ||| |||||| Sbjct 23229 AACCGAGACCGGAAATCCTTTCATGCTTTACAAAGATGCATGCAACAAGAAGAGCAACCA 23288 Query 94542 GCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTC 94601 || ||||||| || ||||| || ||||||| || || || ||||| || | Sbjct 23289 AAAGAACCTCGGTACTATTCGAAGCTCCAACTTGTGCACAGAAATCGTGGAGTACTCTGC 23348 Query 94602 TCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 || || ||| ||||| |||||| ||| || ||| Sbjct 23349 ACCAGATGAGGTTGCTTGCTGTAACTTGGCTTCTATC 23385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494707096759840