Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2210 96.9 3e-15 seq2089 96.9 3e-15 >seq2210 Length=20483 Score = 96.9 bits (106), Expect = 3e-15 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| ||| | ||||| |||||||||||||| |||| Sbjct 17747 GACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGGCCATCCTCGAGTTGTTTGCCGGCG 17688 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | ||| ||||| || ||||| || ||||| ||||| ||| | || | ||| | Sbjct 17687 AAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTGTC-TTGAATCTTCGATTTGAC 17629 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| || || ||||||| || | || || || || ||||| | Sbjct 17628 GTTG-TCGATGGTGTCGGAAGATTCAACCTCGAGGGTAATGGTCTTTCCCGTGAGAGTCT 17570 Query 138599 TTACAA 138604 | |||| Sbjct 17569 TAACAA 17564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| ||||||| || || || ||||||||||| |||| Sbjct 17464 GACTCCTTCTGGATGTTGTAATCGCTCAAGGTGCGACCATCTTCGAGTTGTTTGCCGGCG 17405 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || | |||||||||||| ||||| || || || ||||| ||| || ||| | | Sbjct 17404 AAAATCAAACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACA 17345 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTC 138569 ||| || | ||| ||| | || || ||||| Sbjct 17344 TTG-TCAATGGTATCGCTGGATTCGACCTC 17316 >seq2089 Length=24093 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || || || | | ||||||||||| |||||||||||| Sbjct 11825 CCACCACGGAGACGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 11766 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || |||||||| || |||| |||| | ||||||||||| || || Sbjct 11765 AGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGG 11706 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||| | ||||| || Sbjct 11705 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCCGAAGACTCAAC 11647 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| || | ||||| || || || || || || || ||||||||| || Sbjct 11646 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 11595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246246658880