Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1009 174 2e-38 seq2055 123 3e-23 >seq1009 Length=94825 Score = 174 bits (192), Expect = 2e-38 Identities = 1037/1633 (64%), Gaps = 37/1633 (2%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || || |||||||| || ||||| | ||| ||||| || | |||||| || | Sbjct 24260 CGTAGATAGTACATTCCGGTCTTCAAACCCAATTTCCAACCAGCAAAATGCATAGATGTA 24201 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||| | ||| ||| | |||| | |||||| ||| ||||||||||| || Sbjct 24200 ATCTTACCCATTGTAGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAAT 24141 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 115735 || ||||| || ||||| | || || || ||| | || ||||||| || || Sbjct 24140 GCACCACGATCAGCAGCCATTTGAA-CA-ATTGTTCGTTGAGAGATTTCCCAAACGGTCT 24083 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795 ||||||| ||| || ||| |||| |||| ||| |||||||| || ||||| | Sbjct 24082 TGTAGAGAGCCTTGATGTCAGCTGGAATATTGGGGATGTTTTGGATGGATCCACCATCAG 24023 Query 115796 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGA 115855 | || | | |||||| | | ||||||||||| || | || || | | | Sbjct 24022 CAATGATACGGTTCTTCATGTTGTCAGACCAGAGACCCATATCGACAAGGTCTTTGAGAA 23963 Query 115856 GGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCG 115915 | ||| || || || || || || || || | |||||||| | | Sbjct 23962 GCCATGGATTAACGACTTGGAATTCTCCGGCAAGAACACGACGGGAGTAGATGTTTGAGG 23903 Query 115916 TGTATGGCTCAAAGCACTCATTGTTACCCAAGA-TTTGGGCTGTGGAGGCTGTGGGCATG 115974 |||| || || || || |||||| | |||||| |||||| |||| || || |||||| Sbjct 23902 TGTAAGGTTCGAAACATTCATTGA-AGCCAAGAATTTGGGATGTGCTAGCAGTAGGCATG 23844 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 ||||| | ||| ||| ||| |||| || | | ||| || ||| | || |||| Sbjct 23843 GGTGCAACGAGGAGGGAGTTACGGATTCCGTGTTGCTTGATGGATTGCTTCAAGGAGTCC 23784 Query 116035 CAGTCGTAGT--TGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGG 116092 || || | | || | || | | | ||||||||||| | ||||| || | | Sbjct 23783 CAATCCCACAAATCAG-TAGGTGTAACAC-CCCACATATCATATTGGAGTTCTCCCTTCG 23726 Query 116093 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 116152 | |||| || || | | | || || |||||||| ||| || | ||| | | Sbjct 23725 AGACTGGAGAGCCTTGATAAGTGTCGTATGGGCCAAGTTCCTTTGCAATCTCGACGGATG 23666 Query 116153 CCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGT 116212 | ||| ||||| || || ||||| ||||| | || | |||||| || Sbjct 23665 AGGTCAAGGCGGCGTGGTAGATAGTCTCGAAAATTTGGATGTTGAGGTGCTTGGCTTCTG 23606 Query 116213 CGGAATCAAACGCGAGACGGC-ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGG 116271 ||| || || | ||||| | || ||| |||| || |||||||| ||||||| Sbjct 23605 GGGAGTCGAATGGAAGACGAAGAGCCAAGAAAG-CATCAGCAAGACCTTGAACACCGACA 23547 Query 116272 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCT 116330 | || || | ||||| | ||| ||||| || ||| | || ||||| |||| | Sbjct 23546 GCGATAGGTCTATGTCGGAAATTGCTCTTTCTGGCT-TCTGCGACTGGATAGTAATTGAT 23488 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 116390 || || | | | || | ||| | ||||||| | || |||||||||| | | Sbjct 23487 GTCAATGATCTTGTTCAAGTTTCTAACAACAACCTGAACAACCTCGTGAAGCTTTTGGAA 23428 Query 116391 ATCAAAACTGCGAGTCTC-TTCAT--TGACATACTTAGGAAGGGCGATTGACGCCAGATT 116447 ||| || | | ||| ||||| |||| | | || | ||||| || |||| || Sbjct 23427 GTCATAAGTTCC---CTCATTCATGTTGACGAATGTTGGCAAAGCGATAGAAGCCAAGTT 23371 Query 116448 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACT 116507 ||| || |||||| ||| |||||| | ||||| || ||||| || || || Sbjct 23370 ACAGCAAGCAACCTCATCTGGTGCAGAGTACTCCACGATTTCTGTGCACAAGTTGGAGCT 23311 Query 116508 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCAT 116567 ||| || || | ||||||||| || ||| |||| || ||||| ||||| ||||| Sbjct 23310 TCGAATAGTACCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCAT 23251 Query 116568 ATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTG 116626 | || | || ||||| ||||| | | |||||||| | ||| | | | | | || Sbjct 23250 GAAAGGATTTCCGGTCTCGGTTTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTT 23191 Query 116627 GCACAGTGGCGTTGGCTCGCCCCT-CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCT 116685 | | ||| | | | | ||| ||| |||||| |||||| ||||| ||||| Sbjct 23190 G-ATAGTCTTGC-GACCCTTGCCTGCCTTCTCGTAACCCTCGTAGAGAGCCTCGAACTCC 23133 Query 116686 TCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCA 116745 ||||| | | |||| | ||||| | | || || | ||||| ||||| || Sbjct 23132 TCACCATAAACATCTGCCAAGCCTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCG 23073 Query 116746 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 116805 || ||||| ||||||||||| || || || ||||| | || |||||||||| || Sbjct 23072 TTCTTTTCAACTCGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGT 23013 Query 116806 CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCG 116865 ||| ||||||| | || ||||| ||| | || | || || | | |||||| Sbjct 23012 GCACGAACTTCTTCCTTACCATGATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCA 22953 Query 116866 TGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTT 116919 ||||| || || ||||| || || | | || | |||| |||| | |||| Sbjct 22952 TGCCATGGCTCAAGGTAAACAGCAAAAGCACCAGGACGCTTG---TTACCACCTTGGTCA 22896 Query 116920 ACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCA 116979 ||||| || || || ||| || || || ||||| |||| ||||| | ||| | ||| Sbjct 22895 ACATATCTGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTAGAGTTTCCA 22836 Query 116980 TTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATAC 117037 || || || ||| || | || | | || | || ||| |||| | |||||||| Sbjct 22835 TTGGTACCAGCGATGTATG-CACCAG-TAGCACGGATTCTGTGAATGTTGAGACCAATAC 22778 Query 117038 CCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCG 117097 | || || ||||||||| || || | | | | || |||| || ||||| || Sbjct 22777 CACCAGCATTCTTTGAGATCATGGCACAGATCTTCAAAGTGTCGTAAATACCATCAATAC 22718 Query 117098 AGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGT 117157 || |||| | ||||||||||||| || | ||||| ||| ||||| || Sbjct 22717 TATCCTCCTTCATGTCGATGAGGAAGCACGATGAAAGTTGTGCTTGTGGAGTACCCGCAG 22658 Query 117158 TGAAGAGGGTTGG 117170 |||||| ||||| Sbjct 22657 AGAAGAGTGTTGG 22645 >seq2055 Length=75196 Score = 123 bits (136), Expect = 3e-23 Identities = 338/513 (66%), Gaps = 6/513 (1%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || | ||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 73719 GTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTCTCCAT 73660 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || |||||||| | || || | | |||| | |||| || | | ||||||| Sbjct 73659 GAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTTACCCAAAGCCAT--GAGGAGA 73602 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||| | ||| |||| ||||| | ||| | |||||||| || | ||| | Sbjct 73601 CGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCCAAGAGAGCA 73542 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || | ||| | | ||| || || || ||||| | || | Sbjct 73541 CAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCAACGGCTTCGGTAATGACATCT 73482 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTC 127527 |||| | | | || | | || | | | |||||| || || || Sbjct 73481 TGAACGGCTTGCTTGGATGGGCGGT-GCTTGAGATGAGAGAAGAGAAGGCATGCGAAATC 73423 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 |||||||||||| ||||||||||||||||| || |||||| || || | |||||| Sbjct 73422 GGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCGGCCATGAG 73363 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||||| | |||||| || | || ||||| ||||||||||| || || || Sbjct 73362 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCAAC 73303 Query 127648 ACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 127707 | ||||| || | ||||| | ||||||| | | ||| | | ||| || | Sbjct 73302 AGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGAGTTCTTGTCTTGGATCCATTTGAC 73243 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 ||||| | ||||| |||| ||| || || || Sbjct 73242 AGCCCAGTCGGCCTTCTTCTTGATGCAAGGAAC 73210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487230340640