Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2089 114 3e-20 seq2210 111 4e-19 seq229 84.2 5e-11 >seq2089 Length=24093 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||||||||| ||||||||||||| ||||||||| | | || | |||||||| || || Sbjct 11802 GTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCGAGTTG 11743 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||||||||||||| | ||||| ||||| || ||||| || ||||| ||||| Sbjct 11742 CTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTT 11683 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || |||| |||||| | | || || || | ||||| || || ||||| Sbjct 11682 GGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGT 11623 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || || Sbjct 11622 GAGGGTCTTGACGAAGATCTG 11602 >seq2210 Length=20483 Score = 111 bits (122), Expect = 4e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||| ||||| | ||| || || |||||||| |||| |||||| || | | || Sbjct 17774 CGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTA 17715 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || || || ||||||||||| | ||| || || || ||| || ||| Sbjct 17714 CGGCCATCCTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCT 17655 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| || ||| |||| |||||| | | ||| || || | Sbjct 17654 TCCTTGTCTTGAATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAGG 17595 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 || || ||||| ||||||||||| || |||| Sbjct 17594 GTAATGGTCTTTCCCGTGAGAGTCTTAACAA 17564 >seq229 Length=55923 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 98372 TTCCGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGAAACGAAG 98431 ||| || ||||| || | ||| ||||| | |||||||| | | | | |||||||| Sbjct 24411 TTCGGCAACCTTTCGAACGTAGTTGTGACGCTTCTCCTCACGAAGACGAGCAAAACGAAG 24470 Query 98432 GGCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTATGAAGAAT 98491 |||||||||||| || | ||||| |||||||||||| ||| ||| || |||| ||| Sbjct 24471 GGCAGATTGTCCACCACGACCGTGCTTCTTTGGCAAATCGACAGAAAACTTGTGAACAAT 24530 Query 98492 TTTCTTGGTGTTCCCA 98507 | ||||||| ||| Sbjct 24531 ATCTCTGGTGTTTCCA 24546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178882266754468