Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2089 132 5e-26 seq2210 102 9e-17 >seq2089 Length=24093 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| ||||||| || | || |||||||||||| ||||||||||| || ||||| | Sbjct 11814 ACGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCC 11755 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||| ||||| |||||||| ||||| ||||| ||||| | || | | |||||| Sbjct 11754 ATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTT 11695 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | ||||| || || || || | ||||| Sbjct 11694 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGAT 11635 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||||||| || || || || ||||| ||||| Sbjct 11634 GGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11599 >seq2210 Length=20483 Score = 102 bits (112), Expect = 9e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || | | ||| | ||||| ||||| || || |||||||| |||||||| Sbjct 18243 TTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTA 18184 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || || || | | || || | |||||| || || || ||||| || || || || Sbjct 18183 ATCCGAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATC 18124 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || |||||| ||| ||||||| ||| | | | | || || ||| Sbjct 18123 AGGTGGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGACGA 18064 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || |||| || ||||| || || |||| || || |||||||||||||| Sbjct 18063 TTCTACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || || || | || ||||| || ||||||||||| Sbjct 17745 CTCCTTCTGGATGTTGTAATCGGAGAGTGTACGGCCATCCTCGAGTTGTTTGCCGGCGAA 17686 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || || |||| || | || |||||||| |||||| |||| ||| Sbjct 17685 GATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGAATCTTCGATTTGA-CGT 17627 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||||| || || | || ||||| || ||||| || || |||| Sbjct 17626 TGTCGATGGTGTCGGAAGATTCAACCTCGAGGGTAATGGTCTTTCCCGTGAGAGTCTTAA 17567 Query 46581 CAA 46583 ||| Sbjct 17566 CAA 17564 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||| | ||||| | || ||||| || ||||||||||| Sbjct 17462 CTCCTTCTGGATGTTGTAATCGCTCAAGGTGCGACCATCTTCGAGTTGTTTGCCGGCGAA 17403 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||| ||||| | || | | |||||||||| |||||| |||| | Sbjct 17402 AATCAAACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATT 17343 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | || ||||| ||||| || || | |||||||| || || || Sbjct 17342 GTCAATGGTATCGCTGGATTCGACCTCAAGAGTGATGGTCTTTCCGGT 17295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565220001490080