Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2055 132 5e-26 seq2089 129 6e-25 seq2210 104 2e-17 seq1994 102 8e-17 >seq2055 Length=75196 Score = 132 bits (146), Expect = 5e-26 Identities = 343/515 (67%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || || || || | ||||| || || || || || || ||||||| ||| | Sbjct 73724 TTTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTC 73665 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723 ||| || || || ||||||| | |||||| ||| | || | | ||| Sbjct 73664 TCCATGAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTTACCCAAAGCCATGAGG 73605 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783 || | || || |||||||||||||||||| |||| | | | || | |||| ||| Sbjct 73604 AGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCCAAGAGA 73545 Query 132784 CGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 |||| || || || ||||| | || ||||||||| | || || ||||| | || Sbjct 73544 -GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCAACGGCTTCGGTAATGAC 73486 Query 132843 TTCCCTAACG-CGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAA 132901 || |||| | || | | ||| || || | ||| ||| | | ||| || | Sbjct 73485 ATCTTGAACGGCTTGCTTGGATGGGCGGT-GCTTGAGATGAGAGAAGAGAAGGCATGCGA 73427 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 | ||| || | ||||| || | ||| |||||||||||| ||| || | |||| || Sbjct 73426 AATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCGGCCA 73367 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 |||| || || || |||||||| || |||| |||||| ||| || ||||||| || | Sbjct 73366 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTT 73307 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTCTTTGCTGGCGATCCAG 133080 | || || |||||||| || || || | | || |||| ||||| || | |||||| Sbjct 73306 CAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGAGTTCTTGTCTTG-GATCCAT 73248 Query 133081 CGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 | ||||| |||||||| | |||| ||| || Sbjct 73247 TTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 73213 Score = 114 bits (126), Expect = 1e-20 Identities = 192/276 (70%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || ||||||||||| || || |||| ||||| | ||||||||| |||||| || Sbjct 73107 TATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATTTGGAAA 73048 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||||||||| || ||||| | || ||||| ||| | || |||| || Sbjct 73047 CCGTAAAAGCATCGTGCCTCTGGGATTTGAACTTCGCCGCTGAATCTTTCAACCAAGTTC 72988 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 |||||||| || |||||| || ||||| || || || || || |||||| | ||| Sbjct 72987 TCGTTGACAATTCCGTCGGATGCTGCGAAGAATGCAAGAACATGGGAGATGAAGTAACGC 72928 Query 133348 TCGTTGTCGTTCAAGC----GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 |||| ||| || | | ||| ||||||| | ||||| |||| || | ||| || Sbjct 72927 TCGTCGTCATTGAGTCTGTTGCT-CCAGTCGTGAAGATCCTTTGACAAATCGATCTCTTC 72869 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || ||||| || || |||||||| Sbjct 72868 TGCGGTCCAGAAAGATGCCTCTGCCTTCTTGTACAT 72833 >seq2089 Length=24093 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||||||||||||| |||| || ||| | | Sbjct 11599 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 11658 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| |||||||| || | |||||| Sbjct 11659 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAA 11718 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| || || || || || || | |||||||| |||||||||| Sbjct 11719 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGACTACAAC 11778 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || || |||||| | ||| Sbjct 11779 ATCCAAAAGGAGTCCACTCTCCACTTGGTGTTACGT 11814 >seq2210 Length=20483 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| || || |||||||| | || ||||| ||| ||| | | | | | | ||| Sbjct 17293 TCACCGGAAAGACCATCACTCTTGAGGTCGAATCCAGCGATACCATTGACAATGTCAAAT 17352 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||||||||| | ||||||||||| | |||| ||| |||| Sbjct 17353 CCAAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGCA 17412 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 |||| || || || | |||||| | | ||| ||||||||||| ||||| | || || | Sbjct 17413 AACAACTCGAAGATGGTCGCACCTTGAGCGATTACAACATCCAGAAGGAGTCTACTCTCC 17472 Query 38446 ATTTGGTGCT 38455 | ||||| || Sbjct 17473 ACTTGGTCCT 17482 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || || ||||| | || || ||| | | Sbjct 17782 ATGCAAATCTTCGTCAAGACCCTCACTGGGAAGACAATCACTTTGGAGGTTGAGTCATCG 17841 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| || || ||||| || || | || ||| Sbjct 17842 GACACCATCGACAATGTGAAGTCCAAGATCCAAGATAAGGAGGGTATCCCACCTGATCAA 17901 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | || || || ||| |||| || | ||||| || || |||||| Sbjct 17902 CAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTTTCGGATTACAAC 17961 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| |||| | |||||||| || ||| Sbjct 17962 ATCCAAAAGGAATCGACCTTACATTTGGTCCTTCGT 17997 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314 || || || |||||||| || ||||| ||| |||| || || | |||||| | | | Sbjct 17566 GTTAAGACTCTCACGGGAAAGACCATTACCCTCGAGGTTGAATCTTCCGACACCATCGAC 17625 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | ||| || || | ||||| || || || || |||| ||||| || | || Sbjct 17626 AACG-TCAAATCGAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAACAACGTTTGAT 17684 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||| |||||||| || || || | || || ||| ||| ||||||||||| ||||| Sbjct 17685 CTTCGCCGGCAAACAACTCGAGGATGGCCGTACACTCTCCGATTACAACATCCAGAAGGA 17744 Query 38435 AGCGACGCTGCATTTGGTGCT 38455 | || || || ||||| || Sbjct 17745 GTCTACCCTTCACTTGGTCCT 17765 >seq1994 Length=27662 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | | Sbjct 4069 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 4010 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||||||||| |||| ||||| || | Sbjct 4009 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTTG 3950 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || || |||| |||| || || ||| || ||||||||||||||| Sbjct 3949 ATCTTCGCTGGAAAGCAATTGGAGGACGGACGTACTCTCTCAGATTACAACATCCAAAAG 3890 Query 38433 G 38433 | Sbjct 3889 G 3889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500156519375360